Protein Info for PS417_03280 in Pseudomonas simiae WCS417

Annotation: chromosome partitioning protein ParA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU0680)

Predicted SEED Role

"Chromosome segregation ATPases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UCD1 at UniProt or InterPro

Protein Sequence (946 amino acids)

>PS417_03280 chromosome partitioning protein ParA (Pseudomonas simiae WCS417)
MSKERYGIRRFALLNTAGYSLGLFPLEEPLSVYGANNLGKSASINALQFPILARMSDMSF
GKYTLEQSRRFYFATDTSYILVEVSLPHGPHVIGVVGRGPGGGFGHQFFAYAGKLDLAHY
QKNDTCLRQKELFTNLEREGLKAYELKPDELRRLLVGGHTSIPLDLTLIPLRSTSEQSLK
TFRALFINLLHMREITAAKLKQLFLDAFEHSLRSGSVDYIAACEEAFRDVRRMEQDYNSL
VAAGPLVEALSNGVKQRDILRGKLHRLSPLLDSLLGTWSDYASARKEELTIQAEHYRNEQ
DALQNDQRGGTQELMRLEREISGIQRWLGELSVLKHRFALVDDVKVLEQQLLAAKDAHDE
LAGALAQSRQFSAEDLDERLRDLEKRLKSVKQQLDHADNNSYAKLREEFSQQDVERLMRL
FNSSLFSLPLGEHGITLDEDGQWVKSLEQILDGFKGERFEVPGLSIDISHIEPPALQALA
DRAALRDQKERLEKELKQLKTQQAVASDRAASKTQTEALYQQVLDAQKALEDFRRAQTLS
AEEGEKLENLAQMEAAQDELKRSSDAFTERVQQLSAKLQLVGRQIGDMEAKQRTLDDALR
RRQLLPADLPFGTPFMDPVDDSMDNLLPLLNDYQDSWQGLLRADGQIEALYAQVRLKGVA
KFDSEDDVERRLQLLINAYAHRTDEALTLGKARRAAVTDIARTLRNIRSDYDSLEHQLAL
FNREINKRQVSNLQSFRIVLAPNKEALKHIDQIIHSAGQYEEGETLSVFDLSQSAEQDNK
NEEAKEYLARLVAANHNQLGLKDLFELAFEITKVHGQPVIHTDIDGAASNGTTMTIKALT
NMYLLLHLMDRDQAGRVRLPYYLDEAADIDEKNQAALLETSLQLGFVPILASVKPQVSAQ
VAIDLEGGSGPNGIYIDEADWKYIRRHDVVKATMNVQADEPELDEV