Protein Info for PS417_03270 in Pseudomonas simiae WCS417

Annotation: paraquat-inducible protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 transmembrane" amino acids 48 to 69 (22 residues), see Phobius details amino acids 93 to 121 (29 residues), see Phobius details amino acids 141 to 162 (22 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details PF04403: PqiA" amino acids 44 to 200 (157 residues), 189.6 bits, see alignment E=1.7e-60

Best Hits

KEGG orthology group: K03808, paraquat-inducible protein A (inferred from 98% identity to pfs:PFLU0678)

Predicted SEED Role

"Paraquat-inducible protein A" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U6I9 at UniProt or InterPro

Protein Sequence (207 amino acids)

>PS417_03270 paraquat-inducible protein A (Pseudomonas simiae WCS417)
MRAIDAGILICTECHELNKQDPDSDEQLCTRCGALIHARRPNSLTRTWALLITAAILYIP
ANLLPIMTINSLGQGDPSTIMAGVIQLVQHGMFPIAAVVFIASILVPTFKLVGIGLLLFS
VQRHQPLSAQQRIVMYRFIEFIGRWSMLDIFVIAILVAVVNFGRLASVEANLGAAAFASV
VILTMLAAVTFDPRLIWDNTESDDDHE