Protein Info for GFF6433 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1754 PF12458: DUF3686" amino acids 50 to 503 (454 residues), 646.7 bits, see alignment E=2.5e-198 PF00004: AAA" amino acids 1326 to 1360 (35 residues), 23.8 bits, see alignment (E = 8.1e-09) PF07728: AAA_5" amino acids 1326 to 1453 (128 residues), 22.4 bits, see alignment 1.5e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1754 amino acids)

>GFF6433 hypothetical protein (Variovorax sp. SCN45)
MHPTDETGAPPGAPAQPAASDPSAQTEALVSGSGSYELLKKRLETQGEGLQEKTQELNEQ
RLAEFGRSDQTLILRTRARTENNAVARDLVRIGDLLLLGYNVFIGLRKETAVGDVFGLYR
LVSPDEAGAESDELQPVPLAGTFLEDARFASDFRELYAYYKQATLVQLRVTQDKLLAAFQ
IGQQITDVRVFRWAIERDGRISYIDNRGERDIALPASHDFEWTVATREDHVGGKHPHVNV
LDTVFVETLGGDLTVKIENNTETGLGIYSEPVEDRSQSLTDAEIAWAKLGMLILLRVKPY
REQVTRYLVFNIRTQQVERIDAIGGSCVQLPEDHGIIFPGGYYLQSGEHKRFDLPAETVE
NLRFKRMLRSPNGEDVAYIFYDPKPGRYALFNYNLIDKKLATPIIANGYARFADGRILVF
HDNSGEPSRVHPMQLWQTPFASEEHVSAQPPATGFFGKIGNAELVRGVSDLMGIARAVRE
QAPTKAAYEDLIRQCTRVSDAYFWLDAPEAAGLMGELRSIAEVARSTLAEFEKVDTIRRE
TARALARAEDEQHALLVDIASTIWRAPDDFVKALARLRERRGALQMLKELRYADLPRIAA
MDAALATEQQRIGERAMQFLAADTAFAGQRQALDKLALELPNLATSPALGQLLATLDEQA
AGLDLLTEQLGSLPGGDAVIRTSILDRISLIYADINRMRADARARRKSLGATEARAEFGA
QFKLFSQAVENALEFADTPEKCDDALTRLLAQLEEIEGRFAEQEDFLRDIAEKRENVYEA
LSARRQSLVDARQRRAQGVVDAAGRILDGIPRRIAQFGELTQVHSYFAADPMIGKLHTLI
ADLRTLGAAVPADELDTRLKTARDQALRAVRDKRELVSEGGDTLRLGRHAFTVHRQPVDL
TLVAREDGMAYQVTGTDYQSPVDDERLRELHGYWNQSLVSETPELSRAEYLAGRLLESLL
DGKAERSWTDVRTLLAEDPQHPQLLEMVRRFAAARYQEGYQKGIHDDDALRLLGALVAMQ
DQAGLLAWGPTERALALLYWQHGHLIAHRESLLRRARAAMQMSEMFGRRDALEQLEADTA
RSLNNFVRDVLPDLLPLAGNATQQERDTHDGRVATLCEQAAAYLARELAAHAGETWVVSG
AGEDLAATLLRELERGGRRDAWQADLDAAPPAERWRLARDWVHAYALHQSPESIDWVDDA
ASVLAMPLQRTRVNVALDRTVEGLRGEHPRVADGRMTLNLNDFWRRFLFHATHVVPGFEA
LGSLRHELLEREKARLKLSQFQAKPLSTFVRNRLIDELYLPIIGDNLAKQIGSAGEGSRT
DRMGLLLLISPPGYGKTTLMEYVADRLGLIFVRINCPALGHGVSAIDPANAPNSAARQEL
EKLNLGLAMGSNVMLYLDDIQHTSPEFLQKFIALADGTRRIEGVWNGEPRSYDMRGKRFA
IVMAGNPYTESGDVFKIPDMLANRADIYNLGDVLSGREAAFALSYIENSLTSNPTLMPLA
SRDPKDVQLLVQMAQGHEVPSSALSHAYSAVELEEIKTLLQRLFRARDLLLKVNLAYIES
AAQQEAYRTAPPFKLQGSYRNMTKLAGKITALMRDDELDALLRDHYRGEAQTLTTGAEEN
LLRLAQLLGSPTPEESARWQVICEEFVRQRKLGGADVDGSQRIASSMLDVARAVDGLKPV
PVPPAEGPSDSQRLADAMLQIAVTYRELILPLVTATERRLELDRSITHDMKRLSAEMQAA
QAVPKRTPKNGKEE