Protein Info for GFF643 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 44 to 66 (23 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 100 to 121 (22 residues), see Phobius details amino acids 133 to 151 (19 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details PF03458: Gly_transporter" amino acids 1 to 64 (64 residues), 65 bits, see alignment E=2.2e-22 amino acids 76 to 147 (72 residues), 75.3 bits, see alignment E=1.4e-25

Best Hits

Swiss-Prot: 48% identical to Y1240_HAEIN: UPF0126 membrane protein HI_1240 (HI_1240) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 77% identity to xau:Xaut_2745)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>GFF643 hypothetical protein (Xanthobacter sp. DMC5)
MTAALAAGRREMDWVGVFLLGCVTALGGGSVRDVLLGNYPLSWVAHPSYLIVTGGAALGT
VFLARVMDHLRQVFLFLDAVGLVVFTVIGCNVAIGLGLPVIVVIAAGMITGCVGGVLRDV
LCNEVPLLFRAELYATVSILTGLLYVAGPLAGLPQPLTMAVAMAAGLTLRLLALRFGWSM
PKFVYTKDLH