Protein Info for GFF6367 in Variovorax sp. SCN45

Annotation: T6SS component TssF (ImpG/VasA)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 623 PF05947: T6SS_TssF" amino acids 1 to 620 (620 residues), 753.3 bits, see alignment E=1.1e-230 TIGR03359: type VI secretion protein, TIGR03359 family" amino acids 5 to 622 (618 residues), 649.1 bits, see alignment E=4.4e-199

Best Hits

KEGG orthology group: K11896, type VI secretion system protein ImpG (inferred from 95% identity to vpe:Varpa_2904)

Predicted SEED Role

"Protein ImpG/VasA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (623 amino acids)

>GFF6367 T6SS component TssF (ImpG/VasA) (Variovorax sp. SCN45)
MDARLLDYYNRELTYMHELGAEFAQRYPKIAGRLGMRGIEVSDPYVERLLEGFSFLTARI
QLKMDAEFPRFSQRLLEVVYPNFLAPLPAMAVVQIDGNLNEGSLKAGYELPRHTILRGRM
IKGEQTACEFRTGHAVTLWPVRIADAGIGPVPAEIAHAMPAVARQAKSALTIRIEAVGGA
RFSEMPIERLEFFLSGAELHALRVLELVAHHAVGTVCRSGPGGNARIVPLGDDAIRHEGF
SPDQALLPYDARSFQGYRLLHEYFAFPDRYLFFSVNKLRAAAQAMSGSTMEIVILLDRAD
ADLERLVDAKHFSLFCTPIINLVPRRSDRIPVGPGQHEHHAVIDRTRPRDFEIFTVERVT
GHMANGSEEREFRPFLGSFAADDGDFGAYFSLRREPRLVSDRARAQGTRTSYTGSEVYVS
LVDQHDAPFPHSLRHITLDALCTNRDLPLLLPTGLESDFTLRVSAPVRSIRILRGPSRPY
PALAEGALTWRLISHLGLNYLSLTDVDAAQGAAALREMLDLYGNLADPSVRRQIQGVRSM
ALAPVFRRLPEPGPIVFGRGVEIALKIDEVAFSGASPYLFGAVLEQFFSRHVSLNAFTEF
ALSSLQRGEIARWTPRVGRRPAV