Protein Info for GFF628 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 35 to 54 (20 residues), see Phobius details amino acids 60 to 86 (27 residues), see Phobius details amino acids 93 to 114 (22 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 151 to 173 (23 residues), see Phobius details amino acids 187 to 212 (26 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 221 to 377 (157 residues), 125.3 bits, see alignment E=1e-40 PF00990: GGDEF" amino acids 222 to 374 (153 residues), 124.3 bits, see alignment E=2e-40

Best Hits

KEGG orthology group: None (inferred from 51% identity to xau:Xaut_4417)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (392 amino acids)

>GFF628 hypothetical protein (Xanthobacter sp. DMC5)
MPAATFPIVMNAVVAALFAASYLALALLHRGNTAPLWFAASFGAIVITPLALLAQSYTGW
VVLFAPVIYLSFAACLILMVPGLAVLYRKPIPWGLVTVLGIVTVVSAALALQLPVNTLVR
VVSYQTPFVLATAASCWVVLRDSPRRLRDLLLAGLFALLCMHVPLKAALAISLHTGPHQI
NYMDTPFAVVAQISTGILMVATGLLILVISVLELVRETLEVADTDALSGLLNRRGFEQRA
SDLVHGRTGAAPFALLLIDIDHFKAINDTFGHGVGDQTIRGFGDMLQHTLPQSALIGRVG
GEEFAILLERASPEMARLQAESVRLAIIGHDDQDVPPFTVSIGVALASRDEPLLATLERA
DAALYEAKRSGRNRVCCAEEETLPHNVVPLRR