Protein Info for GFF6248 in Variovorax sp. SCN45

Annotation: Site-specific recombinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 657 transmembrane" amino acids 345 to 365 (21 residues), see Phobius details amino acids 370 to 392 (23 residues), see Phobius details amino acids 436 to 459 (24 residues), see Phobius details amino acids 483 to 503 (21 residues), see Phobius details amino acids 542 to 567 (26 residues), see Phobius details amino acids 597 to 621 (25 residues), see Phobius details PF10136: SpecificRecomb" amino acids 23 to 656 (634 residues), 739.3 bits, see alignment E=1.9e-226

Best Hits

KEGG orthology group: None (inferred from 90% identity to vpe:Varpa_0526)

Predicted SEED Role

"Site-specific recombinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (657 amino acids)

>GFF6248 Site-specific recombinase (Variovorax sp. SCN45)
MAAASRDLQGLLAGLDPTADVAQRHIWLINIFDWLRGDRASPQAAMGRVQLLLDAIEARP
ELRERLRAWWRAFTQSVDLTTLLADYGFAPRTAFASELSERLRRKILPGTPETTDASDLF
RMVLPGVFDAGWIALLDETQLARIGALLADAAIDEDGAPRWRHTVMDAVTYCASQVVATG
FSPELRLRMSPELGAGRPFHALMADLDGLREQMFAQPRDDQALQAAFVVFRDRLDACRAV
TSSVYTHLEDNGISVGLVFRLRQLRERVLRIRELLDCLMSPSAGPSVARLVGRLVLAGGE
RNSIRALIASNSSMLAAKVTERSAETGEHYITRDRASYARMVKKAAGGGALTSITVLLKF
GIYALGLSAFWSGLAAGLMYAASFVAIQLLHLTLATKQPAMTAPALAARLRDIKSDGAVD
GFVDEVANLVRSQVAAVLGNVLVVVPAMAAVALLIQLALGRPLLDAAHASATLNSLSLAG
PTALYAAFTGILLFSASIIAGWTENAFVLHRLDSAMRYNPRIGAFLGAARARRWADFMRT
HISGFASNISLGLMLGLLPAFAGFFGLGLDVRHVTLSAGQIAAAAASTGLAVLQQPALWW
AVAAIPVIGALNVSVSFYFAFRLALRAHSVSLSDRARIRSAIWARWRSRPVSFFLPA