Protein Info for GFF6232 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1812 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF05860: TPS" amino acids 35 to 331 (297 residues), 81.2 bits, see alignment E=1.2e-26 TIGR01901: filamentous hemagglutinin family N-terminal domain" amino acids 69 to 156 (88 residues), 61.1 bits, see alignment 3.8e-21 PF18676: MBG_2" amino acids 1662 to 1733 (72 residues), 33.8 bits, see alignment (E = 4.3e-12)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1812 amino acids)

>GFF6232 hypothetical protein (Variovorax sp. SCN45)
MKQRNRFSQRRLQLRPLALSLVCAGVGAGAAPAMAQVLPSGFTPIAGGVTMTQGVGTMNI
VQPLQRGIVNWQSFSIGAGGLVSISQPSTSAVLLNRVVGDGMSIQASRIDGALRTTLAGN
PNLPGGSVFLINPSGIVFGKGASVNVGGLVASTLDIANSNFMPAGSEDKAIGRNEQLLFF
GPEGSMAQVKVEGGASITTTSPGGTVALLGGVVRNEGEINVARGSVGLVSASKVTLNLDF
DGDGLTTFNIPADGQTKFKLADLQAADPTAVAQLANSGKVAADGGRVVLMAAANVDARQL
VVSQTGVIQARSLSTRNGEIVLDASRAPGGNNEVRIGGTIDAGTGASEAGASGSTGGSVT
LRGDYIRLASGASVDASGTGGGGTVSVQASRAVSMAPDAAISANATGANGTGGSIGIDAS
STHISGSLSARGAGSGNGGAIATSGDQLEVTDTARIDAAGGTGGANGSWTALARGTLNVD
GNAAAYDPNGYADLGNGTHVSASAIGATLGRATDVNLRTALSEGSSDVVFQDGVQVLKSE
GRDARLTVDSANGIAMNSGASIQSTAGALAVNFDANADANEIGGAIRMDNASIATNGGSI
RFYGQGNADTGRAVGGMSVDDGGNSSGVAGITLTDSSLSTCATGAGGCGGSGVIVLRGQG
ASRQANGTADYYVSSDGVEVRGSSLSTGAGGIAIDGQSGIGANGVLLAGTEGGATQLRTG
SGDVSVIGSSRSWTTDDPGAVYGSTVTPYGPDGSMSAPDVTVAVTAGVTLRGAVIDAGGR
VGIDGTGANLQGLAASDAFMTSAQAANNGTGVGYGAGDGVAINGGSITAGKGRDISIAGT
AGGQGFSVRNGGVTQGQAPSAVSISMEAGETVRAEGGSVSIDGRGGDVTVARVLSRGDLP
PGATNALIDTSSTTGAGGTVTVTGRNVLVSDVYSDLTTIDAGGAGQAGTIDIRGSNAIAI
DASASLRADANSASGNGGTVRVIAGDTLRGYGSLSARGGSAGGNGGTIETSAPHFELLGL
RVDASAPMGTAGSWVIDPYDVTIAHGTASGSLTGNPFDPLANSTVQDGDINAALDGGTSV
TITTGTGGNPAAGNITFAAGASIVRSKGAAPLTFELDAAHSIGTSGGASIQSNSGALDVV
FNAGVGGQGGAINYNGVINTNGGNVTMNADAGASSTPAITMNGTSIDTRTTALGDAGPGG
SVRISGRRTLPASIFNTQATVDLTGISIQSSTGDVSISGVGQHGDGVRIQGGSTPSQILT
TSGDIDILGVGASYTYSQSQLAVQSVEINGATLRSVDGNIGIRGLVTPGPQDASSGGVLL
AGNALVTTLGVGNIDIAGESQANGTGVNIVKGAQVIGNRDVVLRASNDGTSDAIAIGGNV
HASGVLNLRPGGVDAASGNAVDRTANPVTLGGTAATGFALSADEFGRLDAPTIVVGSNAH
AADIDVVGPLSLSSALTLQNEGGGNINLGGALTAPKIGLLSRGSITQTAAAPITAGTLMA
RSTGGSVLLDQAANNVSAATVGGGAAGAFRYVDVDTVQLGSVSVTGFDAAGNAPQVASAT
SMAADTVFVRTLSGDLLLGTNVSSTNGTDLVAGSRLQNLGGYTITGAPWRVWADTWVGET
RGGLQGSGIYPNLYHCAYSGLCAVSIPAGANHFIYAQQPVATVVIGDASRPFGFPNPLFS
YGIGGLILGDTGRGFAGTMSSPALPGSLPGLYPINGTFTSAEGYAVNVVPGNLLVTAAPN
LQLPDVVRELPSTWLYDRNMGPPPICFATGPLDGDRAAQGGDVLAREWSRVRSRPNLSSC
VDTDKRNGCSDF