Protein Info for GFF6216 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 643 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 187 to 206 (20 residues), see Phobius details amino acids 215 to 235 (21 residues), see Phobius details amino acids 251 to 271 (21 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 309 to 330 (22 residues), see Phobius details amino acids 337 to 361 (25 residues), see Phobius details amino acids 373 to 391 (19 residues), see Phobius details PF07696: 7TMR-DISMED2" amino acids 41 to 174 (134 residues), 84.5 bits, see alignment E=1.4e-27 PF07695: 7TMR-DISM_7TM" amino acids 186 to 391 (206 residues), 64.3 bits, see alignment E=3.2e-21 PF00512: HisKA" amino acids 424 to 488 (65 residues), 49.5 bits, see alignment E=7.3e-17 PF02518: HATPase_c" amino acids 532 to 640 (109 residues), 77.1 bits, see alignment E=2.8e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (643 amino acids)

>GFF6216 hypothetical protein (Variovorax sp. SCN45)
MKKNRCLYLIFGLILWLSCQAAGAMVLKKGQGDDGPISLAKEVEVFRDPSGKVTMNDIVS
NPDKYSFVREDIRSFERYSDDTLWIRVSLQQEIGTPIDWVMQIFPGWIDEVEMYCVYPDG
KISTNKMGDQHSFSERDIQSSIMAFPLIVDSASRIHYFRVKTHGLTILDLNLWQKSRFEK
VELKRSLFFSAFTGAIAVMVLMNLIFWKWTKDGDFFIYSLFLVIMLGAVFAVQGYSSSLF
FPDNPVYADRFVDATTCALMSIAAIFVCRFFNYRDYSAWAARFMYLAAAVFFLAVILSML
GVIENSIKWLLYLEIFVGIFNTVFVGWVIFRRKAFYQLLAAFIFFVVNSSWLFYSMVLLG
VVRLEQSFVTESLIQFTQLANLTILNIAVVSRSRQSELRVRAERKRAFNSMKVAKIALEE
RVRQREFVAILSHEFRTPLAIIDAVAQALGLSPSGHDERVKRSVEKIRKATRRLTTLVEN
ILLDDALEAGARSTSRSFDLWCAIENVRNVGLPDEHARLNVSAPQRPVIFEGDQEKIEMA
IRNLLLNAIKYSPTDSMVDVQCEVSSNFFNVTVSNKGNPIPESERGELFERYFRGGNSSL
VPGSGLGLHISRTIMRRHGGDVVLVSSNGTGTVFRLTLPLLSQ