Protein Info for GFF618 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 transmembrane" amino acids 7 to 30 (24 residues), see Phobius details amino acids 42 to 64 (23 residues), see Phobius details amino acids 76 to 97 (22 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details amino acids 128 to 146 (19 residues), see Phobius details amino acids 167 to 189 (23 residues), see Phobius details amino acids 201 to 217 (17 residues), see Phobius details amino acids 222 to 237 (16 residues), see Phobius details amino acids 244 to 264 (21 residues), see Phobius details amino acids 351 to 369 (19 residues), see Phobius details amino acids 399 to 426 (28 residues), see Phobius details PF19358: DUF5935" amino acids 1 to 193 (193 residues), 309.6 bits, see alignment E=9.2e-97 TIGR03097: probable O-glycosylation ligase, exosortase A-associated" amino acids 2 to 424 (423 residues), 205.2 bits, see alignment E=8e-65 PF04932: Wzy_C" amino acids 208 to 359 (152 residues), 63.9 bits, see alignment E=1.6e-21

Best Hits

KEGG orthology group: None (inferred from 82% identity to sch:Sphch_2896)

Predicted SEED Role

"FIG01094809: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (454 amino acids)

>GFF618 hypothetical protein (Sphingobium sp. HT1-2)
MRDLFFIAFLGAFFLMGFKRPFLLVIIYAYIDIVSPQRLCYYLLNSIPISLIAFVCAVGA
WIVVDDKKDCRFSARQVLLLILLAWCGYTTATADFPINAATKWAWVWKAIVFAVFLPLVL
RTRLRIEALALFMVLCASTIIINGGMKTALSGGGYGVLNLMVDNNSGLYEGSIISCVAIA
LIPIILWLTQHGTIFPPDWKVKAFAYALCLACMLMPVGTEARTGLVCLVILAGMMLMRSK
RKFVYGPLLAFAALAAIPFLPASFTKRMQTIENHQGDESASTRVAVWMWTLDYVKTHPGG
GGFDNYLQNSFTYFAQSEVGDGDEKRIERRLVTDKGRAYHSAYFEMLGEQGYFGFFLWAL
LHLSCFIRTESIRRMYRKRDGPDEAWITPFAVALQQGHVVYMIGSLFVGIAYQPFIFMML
SLQIGLDTYLTRKRKDAGRVPFFEQPGAQAGVTA