Protein Info for GFF614 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 32 to 52 (21 residues), see Phobius details amino acids 64 to 87 (24 residues), see Phobius details amino acids 95 to 118 (24 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 198 to 219 (22 residues), see Phobius details amino acids 229 to 250 (22 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details PF03547: Mem_trans" amino acids 9 to 304 (296 residues), 94.6 bits, see alignment E=2.5e-31

Best Hits

KEGG orthology group: K07088, (no description) (inferred from 84% identity to xau:Xaut_3876)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>GFF614 hypothetical protein (Xanthobacter sp. DMC5)
MSDLFGLAFPFFGLILLGYFCGRRVKLPEAGLAWLSFFIIYVALPALFYRIVAQTPFHEL
ANPAFILAVLASTATMSLLALGVGLWFRKGNIGEAAIALTAGAYANVGYMGPGLTLAAFG
QAAASPAALIFATDSVFFFTVVPLLMATRGRGESLGHTFVLIAKRVLTHPFNIATLLGVL
AAALEFKEPDALSRMLDYLKNAAAPCALFTLGVTVALRPLKRVPVELAPLLSLKLFVHPF
VALVSLSVFGPFSPVWEHTLLLMAALPPALNVFVLARQYHVFVEEASTAVLLGTLSSVVT
VTLMLYLLRENLIPLSLF