Protein Info for GFF6126 in Variovorax sp. SCN45

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 32 to 48 (17 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 127 to 146 (20 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details amino acids 220 to 240 (21 residues), see Phobius details amino acids 249 to 272 (24 residues), see Phobius details amino acids 278 to 297 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 94% identity to vpe:Varpa_1722)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (310 amino acids)

>GFF6126 putative membrane protein (Variovorax sp. SCN45)
MQALWMVLGAFLFATMSVVVKIASEWFNSGEMVLGRGLIGIVFLWLLARNRGVSLATRYP
GMHAWRSTIGVISLGAWFYAIAHLPLATAVTLNYMSSVWVAAFLVGGALLAWVPVPGRDG
RVERPPLQGTLAMTVLAGFAGVVLMLKPTVSGNEGFGGMLGLLSGLTAAFAYMQVVALSR
IGEPELRTVFYFAVGSAVAGAFATAATGFSGGASWTWQHALWLLPIGLLAALGQLCMTRA
YATAKTQAGTLVVANLQYSGIVFAAFYGVVLFNDRIDAAGWGGMALIIASGIAATVLRQR
AVPKAPAEEH