Protein Info for GFF608 in Variovorax sp. SCN45

Annotation: VgrG protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 839 TIGR03361: type VI secretion system Vgr family protein" amino acids 3 to 495 (493 residues), 521.5 bits, see alignment E=2.3e-160 TIGR01646: Rhs element Vgr protein" amino acids 7 to 495 (489 residues), 454.3 bits, see alignment E=5.9e-140 PF05954: Phage_GPD" amino acids 13 to 319 (307 residues), 321.4 bits, see alignment E=1.1e-99 PF04717: Phage_base_V" amino acids 378 to 444 (67 residues), 48.4 bits, see alignment E=2e-16 PF13296: T6SS_Vgr" amino acids 474 to 575 (102 residues), 117.7 bits, see alignment E=4.9e-38 PF10106: DUF2345" amino acids 615 to 759 (145 residues), 141.8 bits, see alignment E=3.2e-45

Best Hits

KEGG orthology group: None (inferred from 68% identity to vap:Vapar_3859)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (839 amino acids)

>GFF608 VgrG protein (Variovorax sp. SCN45)
MGEALQFHRLVGREALSQANAFDVELLGNSNTIDAKALLGKAATVSMQTGHGGTRHLAGI
VTRFGLAREDARHAFYAMRLRPWFWLATKRHDYRIFQDRGVPEIVAEVLERYGHPFEQKL
SRNYRNWTYCVQYGESDFDFVSRLCEHEGIYYYVRHEATQHVLVFADDIANSHSPLPGGE
TVRYHPHEQSGMTGGEEPAERIYAWETGEELRSGRYGSDDYDFEKPKADLKSRRQMPPGH
DHDDHEVFEWPGHYLLNSDGDAYAQTRNEELLSARNQAHGRSNLRSLAPGHTLRLAGHPC
EAQNRQYLLLGVAYHLQENLRATEGTGDTSGGSIQRFAFDAQPTSMAWRAPRTTPKPRTG
GPQTAVVVGPAGHEIWTDQHGRIKVRFRWDRLGRADENASCWLRVSHGWAGGHFGTAALP
RIGQEVVVDFLDGDPDHPIVVGRFHNADAMPAWQLPRETHLTSMRSRELGGSLRGNHLVL
DDSAGKVQAQLKSDHQCSSLSLGHIGRIEDTAGRKDDRGQGFELRTDGHGVLRAAQGLLV
STEPRPNARAHVTDMGETVARLTQARELHEGMCRMALDAGAHQSGDQDEVAKALKQQNDA
IRGANDGGNGGAPGREFPEFSQPHLTLASPSGIQTTAQGSSHFMSAGHNALTSGGHTSIA
AAKSFLVSARNAVRLFAYKAGMKLVAAQADIDVVALKNGINILAKLNIRQEANRITITAV
EEVVINGGSSYTCWNASGIVHGTRGLWREHAARHSNMGPDSRTPEKMNHDVQTRFDQEVL
FHHIDEENTLAARQVFELLRNGEPGGQEGDEITNTAGTTQQQRSDGPEVYKIKWRGRAE