Protein Info for GFF6026 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 transmembrane" amino acids 157 to 172 (16 residues), see Phobius details amino acids 194 to 217 (24 residues), see Phobius details amino acids 255 to 273 (19 residues), see Phobius details PF13489: Methyltransf_23" amino acids 50 to 198 (149 residues), 61.9 bits, see alignment E=1.9e-20 PF05401: NodS" amino acids 59 to 164 (106 residues), 26.1 bits, see alignment E=2.1e-09 PF13847: Methyltransf_31" amino acids 64 to 182 (119 residues), 35.1 bits, see alignment E=3e-12 PF08241: Methyltransf_11" amino acids 69 to 160 (92 residues), 47.3 bits, see alignment E=8.4e-16 PF13649: Methyltransf_25" amino acids 69 to 156 (88 residues), 43.3 bits, see alignment E=1.5e-14 PF08242: Methyltransf_12" amino acids 69 to 157 (89 residues), 48.4 bits, see alignment E=4.1e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (278 amino acids)

>GFF6026 no description (Variovorax sp. SCN45)
MSDILQFKVVDGIKCFSPEVASSYEDYPDGGFDLTDKNADSSFWVTSRNRLFKGLVQRNR
APTGKTKFLEIGCGTGDFIRHISGDEQLEITGSEVYLKGLVYAKKNQPDVDFIQFDVTKG
RIGEQFDMITAFDVIEHIDDDTTAIANIAHMLRKDGVAIISVPQHMFLWSALDEIVKHKR
RYSRKELVDKLKANGFSVSYATSFVFTLFPLMLVSRLLDNRRDKSQSDETALAKRVKFPP
VLNWFLDLFMRFDEALIRMGVPLPFGGTLLVVARKTGG