Protein Info for GFF5967 in Variovorax sp. SCN45

Annotation: Beta-propeller domains of methanol dehydrogenase type

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 193 to 212 (20 residues), see Phobius details amino acids 264 to 283 (20 residues), see Phobius details amino acids 289 to 306 (18 residues), see Phobius details amino acids 313 to 333 (21 residues), see Phobius details amino acids 339 to 361 (23 residues), see Phobius details amino acids 368 to 388 (21 residues), see Phobius details amino acids 399 to 418 (20 residues), see Phobius details PF04536: TPM_phosphatase" amino acids 28 to 151 (124 residues), 131.4 bits, see alignment E=9.6e-43

Best Hits

Predicted SEED Role

"Beta-propeller domains of methanol dehydrogenase type"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (471 amino acids)

>GFF5967 Beta-propeller domains of methanol dehydrogenase type (Variovorax sp. SCN45)
MLLMAMAFALGLPAQAKPVPVPAMSSRVVDLTKTLSADDASSLRYDISVIEQLTQAQLAV
LIVPTTGEDSIEQFATRVFAQWKLGRKDENDGVLLLVALKDRRMRIEVGTGLEGRITDIQ
AARIIDGEMTPRFRQGDFAGGVKAAVQSLSQLISAPQLQAVEEEPPAEPRNEESSPLHRV
IDAFSTESSQSRINLALLAVMLWTIGVGVWHGSRPRPVAPRVVSHGTGKRGRKGRRMDAH
RAQREGALWADLKTEPASPARRRWPTVLGLLAAGPVAATLALMNLAMPFILFMPVGFMYG
VGYLSGRFKTARYVFICIALAIAGLIALGFYLGADKVPLIIAGVFVAGFIAIGIAAIVVG
VRVHWQRGVLGFMVRLALVTGVIGFAFVQLRPGPDPDEIWLVMALVSFIALVFGFFPATG
GGSGNGDDDDSDSGWSSSSSSSSSSSSSDSSSSSSDSGGGSSSGGGASGSW