Protein Info for GFF596 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: 'RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)' transl_table=11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 transmembrane" amino acids 91 to 110 (20 residues), see Phobius details TIGR03399: RNA 3'-phosphate cyclase" amino acids 5 to 324 (320 residues), 418.7 bits, see alignment E=7.8e-130 PF01137: RTC" amino acids 12 to 325 (314 residues), 266.1 bits, see alignment E=1.8e-83 PF05189: RTC_insert" amino acids 184 to 274 (91 residues), 44 bits, see alignment E=2.6e-15

Best Hits

Swiss-Prot: 100% identical to RTCA_SALTY: RNA 3'-terminal phosphate cyclase (rtcA) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K01974, RNA 3'-terminal phosphate cyclase [EC: 6.5.1.4] (inferred from 100% identity to stm:STM3518)

MetaCyc: 68% identical to RNA 3'-terminal phosphate cyclase (Escherichia coli K-12 substr. MG1655)
RNA-3'-phosphate cyclase. [EC: 6.5.1.4]; 2.7.7.- [EC: 6.5.1.4]; 2.7.7.- [EC: 6.5.1.4]

Predicted SEED Role

"RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)" in subsystem RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.5.1.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (339 amino acids)

>GFF596 'RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)' transl_table=11 (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MARIIALDGAQGEGGGQILRSALSLSMITGQPFEMSGIRAGRAKPGLLRQHLTAVRAATE
ICGAQVNGDELGSQQLRFTPGPIRGGEYRFAIGSAGSCMLVLQTVLPALWFADGSSRVEV
HGGTHNQAAPSADFICRVWEPLLARMGISQRTTLIKHGFYPAGGGAAATVVEPAASLRGL
TLISRGETLRTTAEALLAAVPYHVGEREVATLEAHFPQAEKNVVALEGGCGPGNALSLMI
QSEQLTELFAAFGVKGTSAEAVANQVAHEARRYLASPAAVGEHLADQLILPLALAGEGAF
TVARASAHLLTNIAVVERFLPVRFSCEATESGYLVRVSD