Protein Info for GFF5934 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 878 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF09937: DUF2169" amino acids 39 to 294 (256 residues), 252.3 bits, see alignment E=1.4e-78 PF00805: Pentapeptide" amino acids 563 to 599 (37 residues), 38.6 bits, see alignment (E = 1.2e-13) amino acids 597 to 635 (39 residues), 19.1 bits, see alignment (E = 1.6e-07) amino acids 693 to 723 (31 residues), 16.2 bits, see alignment (E = 1.3e-06) amino acids 751 to 787 (37 residues), 31 bits, see alignment (E = 3e-11) amino acids 784 to 821 (38 residues), 22 bits, see alignment (E = 1.9e-08) amino acids 819 to 848 (30 residues), 19 bits, see alignment (E = 1.6e-07) PF13599: Pentapeptide_4" amino acids 699 to 736 (38 residues), 27.2 bits, see alignment (E = 7.9e-10) amino acids 744 to 813 (70 residues), 34.9 bits, see alignment E=3.1e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (878 amino acids)

>GFF5934 hypothetical protein (Variovorax sp. SCN45)
MKVIKPMPVSLLTRCFEFRGKCWLGVSTLVLVDLAAAPRLWPEKALWQFWATRPEAEMPL
DDAMVRTRAQFLVAGAAFPHGTDGRSCAVAAQVGTLRKTLVVHGDRFWDGDRPGAAAEFA
RMPLRWDRAFGGPAFAANPLGKGAAPVELGGARFHPLPNIERPEAVLSSRQQQPAPAGFG
PIEQTWPQRAQWRGTYDDAWLRKEFPAIASDTDWRFFNAAPEDQQQAEAFRGDESYAFHN
MHPEHALLEGRLPGLRARSFVTHRVGGQEKFKEVPSRLNTLWFFPEDGKIILAFQGMHEI
FEDDGADVVHLLAGIEYLAAPRDALHYLEVRDKRLEKEEGAIESLREDDLLPADLAVPLF
DVDPAPGRMLERGARRAREERIAANEIVRSHGLDPAVHAPPVDGAPLPRIRTIDDLLRVR
KELLAQAQAMQAQAEAGKAASIAGVQAQFEQSGMSFAPIRQEMQGLAMRGPPRPYVDGLL
AHMKTLIAQAEGMPGAADELKQMSTDERQIATWRAGEKSQLAGYRMAAHYQPPADELGKD
AAHALRQRVLEHHAKGGAFEGWDLTGANLSGMSLEGANLRGALMERANLTGTRLDRADLG
DAVLAHATLRLTQLAGARLSRANLGASRIEKSDFSEADLSDAVFTRARIEETSWRGARID
GVMLEEAVIGAIDFTGAQAASILLLRQRDLRACCFAGVRFKECVFLECDVSGVDFTHAHI
DKCAFVSVQARGTSFRGLRIASGCFVKGCALDGADFSQADLPAMNFRGVAAAGAVFRGAC
LRGSDFSESDLARADFGGADARQARFVRAGLQQARLGAANLADAVFQHARLDGTDYRRAN
LFQSDFARVRIGAGADFAEAITTRMRTYPRHAHPTGSA