Protein Info for PS417_03015 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1632 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF17970: bMG1" amino acids 51 to 154 (104 residues), 169.6 bits, see alignment 9.3e-54 PF21142: A2M_bMG2" amino acids 160 to 278 (119 residues), 160.4 bits, see alignment 9.8e-51 PF11974: bMG3" amino acids 280 to 373 (94 residues), 79.2 bits, see alignment 1.1e-25 PF01835: MG2" amino acids 379 to 471 (93 residues), 78.8 bits, see alignment 1.8e-25 PF17972: bMG5" amino acids 477 to 602 (126 residues), 139.7 bits, see alignment 3.8e-44 PF17962: bMG6" amino acids 608 to 720 (113 residues), 105.3 bits, see alignment 1.1e-33 PF07703: A2M_BRD" amino acids 737 to 883 (147 residues), 55.7 bits, see alignment E=3.9e-18 PF00207: A2M" amino acids 953 to 1035 (83 residues), 36.9 bits, see alignment 1.5e-12 PF07678: TED_complement" amino acids 1153 to 1261 (109 residues), 42.6 bits, see alignment 2.3e-14 PF21765: CUB_A2MG" amino acids 1420 to 1479 (60 residues), 33.7 bits, see alignment (E = 2.1e-11) PF17973: bMG10" amino acids 1483 to 1615 (133 residues), 101.2 bits, see alignment E=2.9e-32

Best Hits

Predicted SEED Role

"Alpha-2-macroglobulin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TZ82 at UniProt or InterPro

Protein Sequence (1632 amino acids)

>PS417_03015 hypothetical protein (Pseudomonas simiae WCS417)
MLNKGLFLACALALLSACDSSDKPAAPTAPAAATVAPKPAKAAVDVAALKQRYAGRELSV
VDVSEVQLDGASTLSVSFSIPLDPDQKFADKLHLVDSKSGKVDGAWEISDNLMELRLRHL
EPQRKLVLTVDAGVKAVNDNKLAAEYTARLETRDLQATVGFASRGTLLPTRLAEGLPVIA
LNVDKIDVEFFRIKPESLPTFLAQWGRNTSLQSYESRELLPLADLVYGGRFDLNPARNTR
ETLLLPIAGLKPLQQPGVYLAVMRASGTYNYSQPATLFTLSDIGLSVHRYANRLDVFTQA
LEGGKALDGVDLEVLDAEGRVLGQGKTEKGGHAELPLPKKAQVLLAKQGEQTSMLRLDSA
ALDLAEFDIGGQPSHPLQFFVFGPRDLYRPGETVLLNALLRDKDGNAVKPQPVSVEVRRP
DEQVSRKFVWDADASGLYQYQLQLAGEAPTGRWQLVFDLGDGKPQLYEFLVEDFLPERLA
LELKGSDTALSPADDAVIQVNGRYLYGAPASGNRVSGQVYVRPLREAVKSLPGYQFGSVT
EEELSQDFELEESVLDAKGQETLTLESKWAEAKSPLQLIVQASLQESGGRPITRRLVQPI
WPAEQLPGLRGLFDGQETNGDGPAEFEVLLANQDGQKLAAQNLKVRLVRERRDYYWNYSE
NDGWSYHFNEKFLNLDEQTLNIKAGDTAKVSFQVEWGPYRVEVEDPQTGLVSSLRFWAGY
QAQDNTEGGAVRPDQVKLALDKPAYGDGDTANVTVTPPAAGKGYLLVESAEGPLWWQEID
VPAEGKSFAVKLDPKWSRHDLYVSALVIRPGERKANITPKRAVGLLHLPLDRTQRKLGVT
LTAPEKMRPKQPLTVKIAAKNADGSVPKQVHVLVAAVDVGILNITEYPTPDPYSSLFGRK
AYGVDQFDIYGQLIEAGQGRLASLAFGGDAALAKGGKRPDTSVTIVALQSAPVTLNEQGE
GEVSVNIPDFNGELRLMAQAWSDDRYGMAEAKTVIAAPLIAELSAPRFMAGGDQTTLALD
LSNLSGKPQKLDVQLSADGQLELVNSGVQSVELKQGQRTTLRIPVKAWGGLGQGKVKVTV
NGLDLPGENLPPFTREWTLGVRPAYPALLKHYRAVLKDQPWSLPAGTLDQFDASGRQALL
SLSSRPPLNLGAQISALKAYPYGCLEQTASGLYPSLYADDALLKRLSIKGESDSERKRKI
ELGIERLLGMQRYNGSFGLWGADGEEEYWLTAYVTDFLLRARDQGFAVPPEALKKASERL
LRYVQERNLIDVDYSDNADHTRFAVQAYAGMVLARSQQAPLGALRSIFERRSDARSGLPL
VQLAIALQKMGDQPRADQALLAGLAAQRNANEWLADYGSPLRDQAMILALLEENDLAKGK
REERLFTLSDQLAASPYLSTQERNSLFLAGRLGFAKPDSNWQVSLTGSGGAQELSNQQPT
LELEGKLLSSDLTLSNQGETPVYQQLTISGYPQVPPAPGGDNLSIRREYLGMNGQPLNLR
SLNSGDLVLVHLAVSAKQRVPDALVVDLLPAGLELENQNLAQSAASLENASSQVKEWRES
MQNASLKHQEFRDDRYVAAINLEGSGTTHLLYLARAVTPGTYRVPPPQVESMYRPNWQAV
GETPADLVIKGR