Protein Info for GFF5919 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 PF05638: T6SS_HCP" amino acids 6 to 132 (127 residues), 111.2 bits, see alignment E=2.2e-36 TIGR03344: type VI secretion system effector, Hcp1 family" amino acids 13 to 138 (126 residues), 59.4 bits, see alignment E=2e-20

Best Hits

Swiss-Prot: 37% identical to HCP1_PSEAE: Protein hcp1 (hcp1) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K11903, type VI secretion system secreted protein Hcp (inferred from 43% identity to msl:Msil_2362)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (157 amino acids)

>GFF5919 no description (Variovorax sp. SCN45)
MIDCHFKIDGVKGEAVHKDHKEEIELMSWSWNVHNATCTVGGGSSVGKGSPGMVTLTKKF
DSASPTLAKACANGKHFDKATLVMAKSGEGQQTFMTITFKEVRIADFNVSAAQGGEVHES
VAVSYGDIEIAYKPQKADGTMGGDIKFGWDTRTTETR