Protein Info for GFF5909 in Variovorax sp. SCN45

Annotation: Selenophosphate synthetase-related protein MJ0640

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 TIGR04049: AIR synthase-related protein, sll0787 family" amino acids 5 to 323 (319 residues), 474.4 bits, see alignment E=7.6e-147 PF00586: AIRS" amino acids 48 to 154 (107 residues), 75.8 bits, see alignment E=3.5e-25 PF02769: AIRS_C" amino acids 197 to 305 (109 residues), 48.4 bits, see alignment E=1.2e-16

Best Hits

Swiss-Prot: 50% identical to Y787_SYNY3: Uncharacterized protein sll0787 (sll0787) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: K07123, (no description) (inferred from 92% identity to vpe:Varpa_0594)

Predicted SEED Role

"Selenophosphate synthetase-related protein MJ0640"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (335 amino acids)

>GFF5909 Selenophosphate synthetase-related protein MJ0640 (Variovorax sp. SCN45)
MTSVHDIAEALRATRGFAHKRDISDVVSALGRSLPGGHAALAQAVPIGDDCAAIPDGHGG
YLLFAIEGLVEDFIVRMPWFAGYCGVMVNVSDIYAMGGRPTAVVDALWSTGMSPADDVLR
GMAEAAVRYGVPIVGGHSNNRSERPQLAVAILGHARRLLTSFDAKPGHLLVMAADLRGAY
EEPFPYWNASTHAPAARLRADLELLPAIAEDGLCGAGKDISMAGAVGTAMMLLECSGVGA
RIDLDALPRPDGVQLLRWLSSFPSYGFVLSVAPAQVASVLARFASRDIACGVIGEVDATR
QVRLRAGGEEALLWDFGSDAFIQPPSLRPEAIACP