Protein Info for GFF5908 in Variovorax sp. SCN45

Annotation: Histone acetyltransferase HPA2 and related acetyltransferases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 TIGR04045: putative N-acetyltransferase, MSMEG_0567 N-terminal domain family" amino acids 18 to 171 (154 residues), 229.8 bits, see alignment E=5.3e-73 PF00583: Acetyltransf_1" amino acids 55 to 145 (91 residues), 33.7 bits, see alignment E=5.8e-12 PF13508: Acetyltransf_7" amino acids 63 to 146 (84 residues), 29.4 bits, see alignment E=1.3e-10 PF13673: Acetyltransf_10" amino acids 74 to 164 (91 residues), 24.6 bits, see alignment E=3.3e-09

Best Hits

KEGG orthology group: None (inferred from 89% identity to vpe:Varpa_0595)

Predicted SEED Role

"Histone acetyltransferase HPA2 and related acetyltransferases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (186 amino acids)

>GFF5908 Histone acetyltransferase HPA2 and related acetyltransferases (Variovorax sp. SCN45)
MLCIDDLCEMADHYAPVEYLVREAAQQWERDEAMALRRAVFCIEQGIFARDDRDAVDEHA
RLLVAMSCNGGMPEQVVGTVRIHRGEADGEWWGSRLAVHPAFRSQGHLGATLIRLAVSRA
HALGCETFLAQVQMQNVPLFNKLGWTMLEETNVHGRPHARMRADLDWYPPCHDPVSGFVT
RAKVLA