Protein Info for GFF5869 in Variovorax sp. SCN45

Annotation: internalin, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2699 signal peptide" amino acids 1 to 52 (52 residues), see Phobius details PF01345: DUF11" amino acids 178 to 297 (120 residues), 29.6 bits, see alignment (E = 1.9e-10) amino acids 622 to 759 (138 residues), 27.1 bits, see alignment 1.2e-09 amino acids 767 to 901 (135 residues), 57.7 bits, see alignment 3.6e-19 amino acids 911 to 1055 (145 residues), 32.6 bits, see alignment 2.2e-11 amino acids 1085 to 1210 (126 residues), 33.4 bits, see alignment 1.3e-11 TIGR01451: conserved repeat domain" amino acids 625 to 652 (28 residues), 18.2 bits, see alignment (E = 1.6e-07) amino acids 772 to 828 (57 residues), 31.4 bits, see alignment (E = 1.2e-11) amino acids 919 to 953 (35 residues), 26.4 bits, see alignment (E = 4.4e-10) amino acids 1084 to 1120 (37 residues), 17.7 bits, see alignment (E = 2.3e-07) amino acids 2358 to 2407 (50 residues), 34.3 bits, see alignment (E = 1.5e-12) PF17210: SdrD_B" amino acids 1223 to 1312 (90 residues), 53.9 bits, see alignment (E = 4.9e-18) amino acids 1353 to 1433 (81 residues), 46.3 bits, see alignment (E = 1.2e-15) amino acids 1465 to 1547 (83 residues), 39.6 bits, see alignment (E = 1.3e-13) amino acids 1590 to 1676 (87 residues), 65.9 bits, see alignment (E = 9e-22) amino acids 1722 to 1802 (81 residues), 46.2 bits, see alignment (E = 1.2e-15) amino acids 1844 to 1926 (83 residues), 48.1 bits, see alignment (E = 3.1e-16) amino acids 1961 to 2038 (78 residues), 42.2 bits, see alignment (E = 2.2e-14) amino acids 2081 to 2159 (79 residues), 39.9 bits, see alignment (E = 1.1e-13) PF13620: CarboxypepD_reg" amino acids 1609 to 1661 (53 residues), 33.2 bits, see alignment (E = 1.4e-11) PF17802: SpaA" amino acids 1609 to 1660 (52 residues), 29.2 bits, see alignment (E = 2.1e-10)

Best Hits

Predicted SEED Role

"internalin, putative" in subsystem Listeria surface proteins: Internalin-like proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2699 amino acids)

>GFF5869 internalin, putative (Variovorax sp. SCN45)
MFSTPSNLPDASARRDLFSNPAQAPSGRWRRGLARLAAPLAGLLLAAAAHAAPQVSGLVH
VPDILPAGGTVTSTVTIADTDSLPIDAPGASFTYTIPANAIYMGMAAVPSGTCTSSVPEG
SAGFGTLTCSGITLAANQQLDFKVLLRTLTQGTLSVTAAPVGGGASETKAITVNQGADVA
VSINAPATAPSGSTVPIVFTVTNNGPDTSTGSTLTYPIPTGLTVSSTGLPSGCSISGSLL
TCNVPATPATAGSNTRTFSINGVVTAGAGSTITHQPAVAPAGAVGDGVSTNNSATANTTV
TAGYVLALAKSHDGGQVLVGQRFNFRLSPSFSGSPPTGVTLTDTIPANFAIQTPIPPVAG
WTCSVSGQTLSCTRSNIGGNNGASVALGDIVVPVIAMTAGTGVVNQATVSATGPIANSAT
GSVPADVAVSAADFRADKRRSWPQNNVPLGQAFDYQVGSTNLGSTRLLAGSTIQLVDDVP
AGVQINSVTQRDGYTCTVTKGGATVVPTPVVPVPGPATVTCTRTLTADIGVDTSGGNTAR
NGGYIIVNATIPALPPGGGQVVNSMCVNVALPAAAPTLGADPDANTGNDCTSLGTGVNDN
ATAADVRVLKRVVGIGNSAGNRQIAGQDITWQIEVVNDGPSEAQNVAVTDTFAQVMGAGT
VSQTANGGTFAGTCALPANGGGFGSTSLTGCTLSTLPVCRASTDPASALPLCPVIQVVAK
HYGDGASATDHGFSIDNTARAVAATPADPNLANNDGSTTAYLVARSDVVVTKSASPASVP
VGQLLTYTLTARNQSLAQGSLSRAYDVHVVDTLPAGLMFISATASGGGSCSTQPSTTQPT
GTGTTNNQLECAWTSLDRNVQQTVTVRVRPLYVLNGTTVTNNVHVSTATPELSTANNDAS
VPATITAPVYDLVVTKRDDVDPVNVGDDVGYTITVSNNSASTAEDVRMVDILPLPGPNGE
APPTLVSVSIPTGAPAGTSFALASGAAIGSAGGQIVFTIPTLGGSGATSTGETNSLQFRV
VLRGVSRGTFQNNAKVDFFDAARNVYDAVQGNNTVAENTTFRFKADVEVVSKVAVVKGTN
TPLANASSGQPFDWFVQLRNNGPDSAETTSFTDTLPAALVLDGTPVFTVTGGVFTPVAPT
CTGASGSTTVSCAITSMPANGTATVRIPVRFASGNPPANGTEIVNRAHIVTTGSGDTNGG
ADPNAGNNFNEGRVTVQNSALSGRVYEDLNGNGLIDSGEPGIAGVTMRLTGTDSMGNAIS
LTTTTDSNGNWGFTVPAGTYSVTEDQPAAYLPGITRAGTVSGAGSAQGTVPTTGAGVTSG
PNGSNANRIDNIVLGTGGSSSANNFGEVRASSLAGRVYQDADYSGTSTTGDPGIAGVTVT
LAGTDMFGNPVSKTTTTATGTGNYLFDNLLPGLYKLTETQPAGFADGSDAAGTAGGTVGN
DVVSDIALRSNAAATGYDFGELLTRIGVRVFVDANNDGIPQAGDTGIPNVELRLTGTDAA
GNPVNILAVATGTTGSYEFRNVPPSGAGGYTITETQPANYAPGKANNNGLPGTPQAGGNA
ITGVTVSGTNVPLTQGDYYFGELLPGGISGRVYYDRDGSGVQNAPGEPGIAGVTITLTGT
DINGQSVTRTTTTDASGDYSFPNLAPGSYTVTETRPQGYEPGITRAGNVSGTGSTAGTVP
TGGAGVSNGPNGSTANAIQNIVLGAVGAGSAGNNFSAVRPASLAGYVYADVAPSNGVRDS
GEPGIAGTTVRVTGTDFLGNAVDRTVQTGADGGYLFDKLVPGTYQIDETQPAGVADGPES
LGTVNGAPRGVANPGNVNDRFGGIALVSEDVGIDYNFGERGGQIAGWVYVDNNNDGIRQA
GEPGIPGVTLTLTGRSASGLAVNATVVTDATGRYVFTGLLPADAAGYTIRETQPVTYADG
LDAVGTLDGVPSGTLGNDVISAIAYRGGNGDNYNFGERGASLAGTVYNDANRNGTREPQD
LPIPGVTITLTGTDAAGQPVTRTAVTDANGRYELPGLPLPGSGGYTITETQPAGYEEGIA
VPGTLGGTAQGPNQIRVNITGLDAHGTGYDFTEHSSQPASLTGNVWFDLNHNRSRDSGEG
GGEGWTVELLRCADGGNACAENAATVLYSVTTGADGGYRFGDLVPGEYRVRFRSPDGRYV
GGVWPTDASQNGAGGPYPTPSPSDPRFTIKVRVNPGANVQKQDLPYDPGGVVYDSVSGTP
VPGAVVRLVGPPGFDPAQHLFDGRDSYTTGPSGYYDFFVLPGAPAGEYRLVVTPPGNYLP
SSIYPAAAGALGTQSCSAPANGPAPAQTNPCVVSPGAALVPGAGYYMVFQMPGGGGQHVV
ANNIPLDPSDATLIELRKTTSKLTVKKGELLPYRITARNTRGNPVPGVAVVDTLPPGFRY
VPGSLTVRTLPGGVALPVVPQLNGRQLVVPGQNFAPNETKEYLMVAGVGVGVGEGEFVNQ
VVATQGVGGRTLSNLATATVRVVPDALFDCTDVIGKVYDDRNANGYQDEGEPGIANVRIA
TVNGVLVTTDAEGRYHIACAAIPKEGTGSNLVLKLDERTLPSGYRTTSENPAAERATRGK
VLKINFGATVHRVVRLALQGAAFEDGAAALRPGFVPELDRTVSVLAEKTSVLRLAYRAAP
GEPASLGRQRTDAVKAAVLARWKQLGEQRARADGNAPPLFNLDVEVELVPAATQEGSKP