Protein Info for GFF5868 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1427 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details PF00691: OmpA" amino acids 114 to 210 (97 residues), 44.2 bits, see alignment 1.1e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1427 amino acids)

>GFF5868 hypothetical protein (Variovorax sp. SCN45)
MTRPFAQNPSQRADMKRKLPKRIALAGAVTAACMGMGLAAAQESAVRGRMHDQAAPDPRA
VDIDGTRLLPRSSERELPKATFVLGDASAPVAAAGPTPPPVPGAERSDTGTPHFESGADG
LAPADRARLDRIAEQVKGRDGLRFEIVGHTDTQALSAKSRERFADNHALGLARAQQVARY
LTQRLGLPEGAAAATSRGPDVPVATPATDPANWAANRRVEVRVYWRDAPVAVAPAPAVAD
PGVCRTFTAFGTDDAPLRLSVDGQLLTADGKATAGDGTTSADRQRCVDVQLERNQLRLQY
DNLSQPRRLSASAWPTTVVAGDTVRFAGYSNYLLFTSKAELRVFTANDVMQRRLLATVPL
DAGLRGEWQVPDGLLDRLTDGAADAGTKLYYRVRVYDRQGRFDETDDLSLLLAKRHVPEK
GTPPDPARELLRGYGMNNIAIANIPLAAGTVTASGAAIRPGETVRALGFAVPVDESGRFV
FQQLVPRRVQTGEIAVTDAQGATRAYRRDFELPASDWFFVGQADLTVGSNSVSGPAAIMT
NDKNRYGGGGWSEGRIAGYAKGQLNDRWTLTASVDTEERPLKELFRNLDRKDPTSLFRRF
DPEDSWTTFGDDSTSIQDAPTQGRFYLRVDDGRSQAMWGNFKLNFGDTELTRVSRGLYGF
HGRYLGDESTSFGEARLKVDAFAAEPGTLAAREEFRGTGGSLYYLRNQDITRGAERVTLE
IRDRDSGLVLKRTQLVPSSDYEIDYLQGRVLLSAPLPSLSDDGSLVRAGGFTGMPTYLVV
DYEYTPIATSLNSLAIGGRVSWWANDHVGVGVTASRQDQIGADQRLAGVDLTLRKTENTY
FKGEFARSKGPGTGQLDSMDGGFNFSGRNGAVGSLLGSGPTGNANAWRLEGQADLADFDI
RGGGRVSAYAQSRDAGFSAPGQYASNATRQVGAAATVPFGEKGENGELRLKADRRDERDG
YNSSVLDAQYALRLSPEWKLGLGIRYDDKTGDAIITSPSLPTTQAVSGERADAAVQLEYT
GSDRWSAYGFAQKTLRRTGTRLENDRLGFGGRYRVNDKLALRGELSTGDGGLAGKAGVDY
QYDDRSSLYMTYVADTGRTDENLIGRGGTLVTGVRSRVGDGLTMFTEHRQATGTQPGLTH
AYGVQYAPDTRWTFGVNFENGWVGAETLGATRREAIAFTTGYSSERLKYSGGLEYRKDRT
TSETRTSWLLKNSFTWKVDDDSRWLGKFNWADSDSSTGVLAAAKYTEAMIGYALRPAFND
RLNLLFKYTYLYDLSSPGQVVSSGVDSSLGTVSTTGIDYQQRSHVFAIDATWDLNERWTL
GGKYAWRRGDLRASRDSSAPWFKSSAELAVLRVDWKLVRNWDWMVEWRSLRARELQDRKN
GWVTAAYYHVNENLKVGVGYNFTDYSDNLTDMSYRSKGWFLNVLGKF