Protein Info for GFF5855 in Variovorax sp. SCN45

Annotation: T1SS secreted agglutinin RTX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 6000 6613 PF22783: BapA_N" amino acids 1 to 126 (126 residues), 87.7 bits, see alignment (E = 2.3e-28) PF17936: Big_6" amino acids 163 to 240 (78 residues), 68.1 bits, see alignment (E = 2.9e-22) amino acids 245 to 322 (78 residues), 67.3 bits, see alignment (E = 5.3e-22) amino acids 327 to 403 (77 residues), 51.3 bits, see alignment (E = 5.3e-17) amino acids 415 to 484 (70 residues), 71.1 bits, see alignment (E = 3.5e-23) amino acids 489 to 566 (78 residues), 65.3 bits, see alignment (E = 2.3e-21) amino acids 570 to 648 (79 residues), 60 bits, see alignment (E = 9.8e-20) PF19077: Big_13" amino acids 258 to 321 (64 residues), 31.2 bits, see alignment (E = 1.1e-10) amino acids 421 to 485 (65 residues), 27.2 bits, see alignment (E = 2.1e-09) amino acids 975 to 1069 (95 residues), 33.1 bits, see alignment (E = 3e-11) amino acids 1095 to 1177 (83 residues), 31.7 bits, see alignment (E = 8.3e-11) amino acids 1203 to 1285 (83 residues), 35.4 bits, see alignment (E = 5.8e-12) amino acids 1303 to 1393 (91 residues), 37.2 bits, see alignment (E = 1.6e-12) amino acids 1420 to 1500 (81 residues), 30.3 bits, see alignment (E = 2.2e-10) amino acids 1513 to 1603 (91 residues), 28 bits, see alignment (E = 1.1e-09) amino acids 1634 to 1716 (83 residues), 30.3 bits, see alignment (E = 2.2e-10) amino acids 1741 to 1824 (84 residues), 31.8 bits, see alignment (E = 7.6e-11) amino acids 1849 to 1932 (84 residues), 32.5 bits, see alignment (E = 4.5e-11) amino acids 1952 to 2040 (89 residues), 38.9 bits, see alignment (E = 4.5e-13) amino acids 2066 to 2148 (83 residues), 34.8 bits, see alignment (E = 8.6e-12) amino acids 2177 to 2256 (80 residues), 32.3 bits, see alignment (E = 5.3e-11) amino acids 2264 to 2364 (101 residues), 33 bits, see alignment (E = 3.3e-11) amino acids 2389 to 2471 (83 residues), 30.7 bits, see alignment (E = 1.7e-10) amino acids 2495 to 2580 (86 residues), 31.6 bits, see alignment (E = 8.7e-11) amino acids 2712 to 2796 (85 residues), 36 bits, see alignment (E = 3.8e-12) amino acids 2825 to 2904 (80 residues), 29.9 bits, see alignment (E = 3e-10) amino acids 2925 to 3012 (88 residues), 28.3 bits, see alignment (E = 9.5e-10) amino acids 3024 to 3120 (97 residues), 34.5 bits, see alignment (E = 1.1e-11) amino acids 3146 to 3228 (83 residues), 36.8 bits, see alignment (E = 2e-12) amino acids 3254 to 3336 (83 residues), 29.2 bits, see alignment (E = 4.8e-10) amino acids 3363 to 3444 (82 residues), 34.4 bits, see alignment (E = 1.2e-11) amino acids 3470 to 3551 (82 residues), 31.8 bits, see alignment (E = 7.6e-11) amino acids 3563 to 3654 (92 residues), 28 bits, see alignment (E = 1.1e-09) amino acids 3686 to 3767 (82 residues), 30.5 bits, see alignment (E = 1.9e-10) amino acids 3792 to 3875 (84 residues), 32.6 bits, see alignment (E = 4.2e-11) amino acids 3902 to 3983 (82 residues), 34.1 bits, see alignment (E = 1.5e-11) amino acids 4009 to 4091 (83 residues), 37.7 bits, see alignment (E = 1.1e-12) amino acids 4118 to 4199 (82 residues), 36.1 bits, see alignment (E = 3.4e-12) amino acids 4225 to 4307 (83 residues), 32.8 bits, see alignment (E = 3.7e-11) amino acids 4332 to 4415 (84 residues), 35.5 bits, see alignment (E = 5.3e-12) amino acids 4440 to 4522 (83 residues), 36.8 bits, see alignment (E = 2.1e-12) amino acids 4550 to 4631 (82 residues), 28.4 bits, see alignment (E = 9e-10) amino acids 4658 to 4739 (82 residues), 29.7 bits, see alignment (E = 3.3e-10) amino acids 4764 to 4846 (83 residues), 30.1 bits, see alignment (E = 2.6e-10) amino acids 4873 to 4955 (83 residues), 33.2 bits, see alignment (E = 2.8e-11) amino acids 4976 to 5063 (88 residues), 29.4 bits, see alignment (E = 4.3e-10) amino acids 5087 to 5171 (85 residues), 33 bits, see alignment (E = 3.3e-11) amino acids 5200 to 5279 (80 residues), 31.8 bits, see alignment (E = 7.6e-11) amino acids 5287 to 5380 (94 residues), 45.9 bits, see alignment (E = 3.1e-15) PF13517: FG-GAP_3" amino acids 5975 to 6035 (61 residues), 31.8 bits, see alignment (E = 8.1e-11) TIGR03661: type I secretion C-terminal target domain (VC_A0849 subclass)" amino acids 6530 to 6610 (81 residues), 33 bits, see alignment (E = 1.1e-11)

Best Hits

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (6613 amino acids)

>GFF5855 T1SS secreted agglutinin RTX (Variovorax sp. SCN45)
MVSLEVIEKRGGAVNKIPASNEISLTEASVVRIELPRSQVRSMRRAGDDLLITTASGEVV
TIHGFFAPYAGREKSDLVLLDEDGGKWFANLGDAQQGELAVGYSGIDSVEPLLLQQGFDL
SALPWVIGGGLAAAAAVSGSGGGGDGPGALQFPPPGQGDTTSPAQPTVRPTNGRAITGMA
EPGSLVTVTDGNGRVIGSATAGADGSYTITPTTPPPDGTVLHVVATDPAGNASPPATATV
DATPPAQPTVKPTDGGHITGTAEAGSVVTVTDGNGHVIGSATAGADGTYTITPATPPADG
TVLHVTATDAAGNTSAEATTAVDRTPPAAPVLNPTDGNPITGTAEAGSVVTLTAGGVVIG
SVTAGPDGVFSFTPATPPAQGTVIVAVATDAAGNASAPASTTIDAISPTPTVEPTNGSVV
TGTAEPGAVVTVTDGNGHVIGSATVAPNGTYSITPVSAPPNGTVLHVTATDPAGNTSAEA
TVTVDSVPPAAPTVQLTDGSPITGTAEPGSLVKVTDGNGHVIGSATAAPDGSYTIVPATV
PPNGTVLHVTATDASGNTGPEATVTVDSVAPGAPTVNPTSGSPITGTAEPGSLVTVTDGN
GHVIGSATAQPGGTYSIVPATVPPNGTVLHVTATDPTGNTSAETTATVDSVAPVIAVTIV
NDANNDGFINAAEKGPDVTVRVTLVSGAAVGDVIDVTDGSHVVSVTLVAADLANGYINVS
FANPAEGATINVSATSRDLAGNVSAPPATDSATVDTTLAAPVLTVGPITPDNVINAAEAG
TTVTVSGTATGTQAGNVVTLVINGVSYSGTVDAGGNWHIDVAGSDLVADADHTVDASVLT
TDAAGNTATGTATHAYGVSTSPPAIAIGSPVAGDDLVNASEDHALVVSGTTQNVQNGQTV
TITFSDGTHTVTATAVVAGNAWTANAVDISGLTNGPVTIQAQVQDLALNTATDTHTVTLD
NVAPTQAAAIVSYTDDVGADQGNLPGGTVTDDATPVLNGTLSAALGTGEVVRIYDGAVLV
GTATVSGTTWTFATPALANGSTHTYTAVVVDAAGNLGTASAGFTLTIDTTAPTQTASIGG
YVDNVGTVQGTFGSGTSTDDTTPTLTGTLSAPLGTGDVIRIYDGTTLVGTATVTGSTWTF
TPPALADGSTHSYTAVVADTAGNLGTPSSAIVINVDTTAPTQTASIGGFVDNVGIVQGTF
GSGTTTDDTTPTLTGTLSAPLGAGDVIRIYDGTTLVGTATVTGSTWSFTPPALADGSTHT
YTAVVADAAGNEGTPSTGIVIAIDTTAPTQTATIGGYTDDVGTNQGSFGSGTSTDDTTPT
LTGTLSAALGTGDTVRIYDGTTFVGTATVTGTAWTFTPPALADGSSHSYTAVVTDAAGNQ
GTASPALVLTVDTTAPTQTATIGGYIDDVGMVQGSFGSGTTDDPTPTLTGTLSAALGTGD
VVRIYDGTTLIGTATVTGTTWTFSPPTLAEGVPHSYTAVVADAAGNQGAASPALTLALDT
TAPTETAAILSYTDNAGAQTGDFGSGTTTDDTTPVLNGTLSAALNAGDVVRIYEGTTLIG
TATVTGTTWTFATPGLLNGSTHTYTAVVADAAGNEGAPSADFTLNVLTTGPSQLATVVSY
TDDVGTNQGNFGSGVPTDDTTPVLNGTLNASLSAGEVVRIYDGTTLVGTATVTGTTWTFA
LPALASGSTHSYTAVVADAAGNESTPSPAFTLAVDTAPPTLTAGIAGYTDDVGVNQGSFG
SGTSTDDTTPVLTGTLSAPLAAGDVVRIYEGTTLVGTATVSGTTWSFATPTLASGSTHTY
TAVVADAAGNEGTPSAGFTLTIDTTPPMQTAGIGSVTDDVGTVQGNLPSGSTTDDTTPTL
NGTLSAALAAGDTVRIYDGATFIGTATVTGTTWSFTTSALANGSSHSFTAVVADAAGNLG
TASPAFALTVDTTVPSQTAAIVNYADDAGTVQGSFGSGTTTDDTTPTLNGTLSAPLGTGE
VVRIYDGTTLVGTATVSGSSWSFTPPALADGTTHSYTAVVADTAGNQGTASPAFTITIDT
TPPTQTASVGGYVDNVGTVQGTFGSGTSTDDTTPTLTGTLSAALGAGDVIRIYDGTTLVG
TATVTGTTWSFTPPALADGSTHTYTAVVADAAGNEGTPSASIVIAIDTTAPAQTAMIASY
TDNVGANQGDFPGGVPTDDTTPVLNGTLSAALAAGDTVRIYDGTTFVGTATVTGTTWTFS
PPALAGGSTHTYTAVVADAAGNEGTPSAGFALTVDTSAPTQTIAISSYADDAGSITGNFG
SGVPTDDTTPVLNGTLGAPLAAGEVVRIYEGTTLVGTATVTGNTWTFATPTLADGSIHTY
TAVVADAAGNLGTASGGFTVVVDTTPPAQTALIASYADDVGTNQGNFGSGTSTDDIMPVL
NGTLSGPIGTGDTVRIYDGGTFVGTATVTGSTWTFATAALADGSTHSFTAVVTDAAGNQG
TASPAFTLTVDLTPPAQTAAIASYTDDAGIVQGSFGSGTVTDDTTPVLNGTLSAALGAGE
VVRIYEGSTLVGTATVTGTTWTFATPALANGSTHTYTAVVADAAGNEGAVSAGLTLTVDT
TAPAQTASFTGYTDDVGTLQGSFGSGVPTDDTTPVLNGTLSAPLGAGDTVRIYDGSTFVG
TATVNGTTWSFATPVLADGSSHGYTAVVADAAGNLGTASAALVLTVDTTPPAQTATIGGY
TDNVGTIQGSFGTGTSTDDTTPTLTGTLSAALGTGDTVRIYDGATLVGTATVTGTTWSFT
PPALANGSTHSYTAVVTDTAGNEGTPSAPLALTVDTTAPTASASFTGYTDNVGANQGDFP
GGVPTDDTTPVLNGTLSAALGAGEVVRIYDGTTLVGTATVTGTTWTFATPALANGSTHTY
TAVVADAAGNEGSASAGLVITVDTTAPTQTATIGGYIDDVGTNQGSFGSGTSTDDTTPTL
TGTLSAALGSGDTVRIYDGTTFVGTATVNGTAWSFATPVLADGSTHTYTAVVADAAGNEG
TPSAGIVIAIDTTPPAQTAAIATYTDNAGTNQGDFASGTTTDDTTPVLNGTLSAALGTGD
VVRIYDGTTLVGTATVSGTTWTFAPPALANGSTHTYTAVVTDAAGNEGAASAGFTLTIDT
TAPTQTASIGGYVDDVGTVQGSFGSGTSTDDTTPTLTGTLSAALGTGDVVRIYDGTTLVG
TATVTGTTWSFTPPALADGSTHTYTAVVADAAGNEGTPSTGIAITVDTTAPTQTASIGGF
VDNVGTVQGTFGSGTSTDDTTPTLTGTLSAALGTGDTVRIYDGTTFVGTATVTGTTWSFT
PTALADGSTHSYTAVVADTAGNLGTPSSAIVINVDTTAPTQTATIGGFVDNVGIVQGTFG
SGTSTDDTTPTLTGTLSAALGTGDVIRIYDGTTLVGTATVTGTTWSFTPPALADGSTHTY
TAVVADAAGNEGTPSAGIVIAVDTTAPTQTATISGYIDDVGTVQGTFGSGTTDDPTPTLT
GTLSAALGTGDTVRIYDGTTFVGTATVTGSTWTFSPPALAEGVTHSYTAVVADAAGNQGA
ASPALTLTLDTTAPAETAAILSYTDNAGAQTGDFGSGTTTDDTTPVLNGTLSAALNAGEV
VRIYEGTTLIGTATVTGTTWTFATPGLLNGSTHTYTAVVADAAGNEGAPSTDFTLSVLTT
GPSQLATVVSYTDDIGTNQGSFGSGVPTDDTTPVLNGTLSAGLSTGEFVRIYDGTTLVGT
ATVTGTTWTFALPALASGSTHSYTAVVTDAAGNESTPSPAFALAVDTTAPAQTAAIGGYT
DDVGTLQGSFGSGTSTDDTTPVLTGTLSAPLAAGDVVRIYEGTTLVGTATVSGTTWSFAT
PTLASGSTHTYTAVVADAAGNQSAASTGFTITIDTTPPAQTATVGGYIDDVGTVQGNFGS
GTSTDDTAPTLTGTLSAALATGDTVRIYDGATFIGTATVTGSTWTFTPPALADGSTHSFT
AVVADAAGNEGTASAPLVLAIDTTPPAQTATIGGYTDDVGTLQGSFGSGTSTDDTTPTLT
GTLSAALGTGDTVRIYDGATLVGTATVTGTTWSFTPPALADGSTHSYTAVVADAAGNESG
ASPAFTLTVDTTPPAQTATIGGYTDNVGTIQGGFGSGTSTDDTTPTLTGTLSAALGTGDV
VRIYDGATLVGTATVTGTTWSFTPPALTNGSTHTYTAVVSDAAGNQGTASPALVLTVDTT
PPAQTATIGGYTDDVGTLQGSFGTGTSTDDTTPTLTGTLSAALGTGDVVRIYDGATLVGT
ATVTGTAWSFTPPALANGSTHSYTAVVADAAGNEGTASTALVLTVDTTAPLQSATIGGYV
DDVGTIQGSFGSGTSTDDTTPTLTGTLSAALGTGDVVRIYDGATLVGTATVTGTSWTFTP
PALTDGSTHSYTAVVADAAGNEGTASTALVLTVDTTAPTVAATIGGYTDNVGAIQGSFGS
GSSTDDTTPTLTGTLGAALGTGDTVRIYDGTTLVGTATVTGTTWSFTPPALADGTTHTYT
AAVADAAGNEGPRSAGLSLTVDITPPAQTATIGGYTDDVGILQGSFGSGTSTDDTMPVLT
GTLSAALATGDTVRIYDGATFLGTATVTGTTWSFATAALPNGSTHNFTAVVADAAGNLGT
ASAGFTLTIDTTPPAQTTAIASFTDDAGVLQGNFGGGTVTDDTTPVLNGTLSAALAAGDT
VRIYDGATYIGNATVSGTTWSFATAALANGSTHNFTAVVADAAGNLGTASGGFSLTIDTT
PPAQTAVIANFTDNVGTLQGNFGSGTVTDDTTPVLNGTLSAALAAGDTVRIYDGATYIGN
ATVSGTTWTFAPSALAGGSSHSYTAVVADAAGNLGTASAAFTLTVDITPPAQTATIGGYT
DDVGILQGSFGSGTSTDDTTPVLTGTLSAALAAGDTVRIYDGATLVGTATVTGTTWSFAT
PTLANGSTHTYTAVVADAAGNEGTASAPLALTVDTTPPTLTAAITAYLDDVGTNQGSFGS
GTPTDDTTPVLSGTLSAALSAGDTVRIYEGATFLGNATVTGATWTFATPTLANGSTHTYT
AVVADAAGNLGTASAGFSLTIDTTPPVQTALIATFTDNVGIFQGNLGSGTITDDTTPVLN
GTLSAALGAGDTVRIYDGATLIGTATVTGTTWTFATPVLANGSTHTYTAVVADAAGNQGT
ASAAFSLTIDTTPPAQTTLIASFSDDVGINVGNFGSGVPTDDTTPVLNGTLSAALAAGDT
VRIYDGATYIGNATVSGTGWTFATPVLANGSTHVYTAVVTDAAGNQAAASAGFTITVDTT
PPTAPIKIVSIADDTGVSATDFLTNDTSLTVNGTVGTLGAGEKAQISINGTAWVDLVVTG
GTWSFVDARVLTGGTYTYQVRVVDAAGNIGATGSQAVVVDLTPPSQVAAVASFLDNVGPV
TGTLLNGAITDDTTPVLNGTITAGVAAGDRLRIYQDGVLVQTLVLTAGQTSWTYAPPVLG
FGLHAYTVTLVDAAGNETLPGTPFTLTVDALATLTALATDTGVTVAGGYSDSSALNTDFV
TRDNTPLLSGTIARPLDANEAVRISLDGGLTWVTVQSTAGATTWSYEPPAYAASATVAAQ
VRIDNTANGTHGTASTVTYTVDLLAPVLGLSAPGLANAATIDSDGDRTIAPGTAVFSSAV
SGTAEVGTTVALINDVNHDGIYTEGVDVVLGTAVVGAGGTWTISVALGASADSYRLGYVV
WDAAGNQSRMSGTTQLDVVPVLDHLSAAASAHGTSNTTGYGGAMAINALGNWSFAGDQAI
YNGTSRTSYSTTDLAVQLLSGGGSTAYSFFDYNLDGILDAIGTDNNAGGTNSTPLWTGLL
GLGYTPGAVGTGLTGVSYGGVAVIDMDGDGFADAIVGDGAADSASFLKNTAGVFSPYGNS
TGIGLTAAGIANLQTGREVSGVDLNNDGRVDLALHSTTTTTLGNNNDYTLTLLTNNGKSS
LNGANWTESQAINDVFGTNANTLNSSDPVSLTWADFNNDGWLDLYINNTRAGAASRVYLN
NAGTLSTTGIAVANDTLSGDASVAVDWNGDGRMDAIELDYATGVANLYTNSGNIAAGAWA
TRQLASVGANSVNSIAAADYDWDGDIDLLVGMNGNTATQLIANTNQVKDGTSLHLRILNA
QGNNVYFGNTVQVFNAQGTLVSTQILNPQSGNWGNDSSGIVNVFGLDPTQTYTVKLLANS
NGASSTFSWSVAPGDATSAQVLTTTDTSTLLPNVMTGTGYNDTYVVGNVAGGSTIYNGGG
GWSTPLLPGETKTWSATGGMDIVDFRNAPLGVGVDLTTNLVTGWGILGTVNNVEGVRGSA
LADTFVGSLQDNMFEGRGGNDSYYLGLNAGNDRLVYNLINSADKATGGNGSDVAYGFTLG
SMANAASVDADLIDLGGLLSGYTGTAHVYRDAATGNYVLDPSSAGLLNYIHVTNSGGNTV
ISVDLAGTGNFTTPLLTLTGVTTSLETLLGNGQLLIGGTGSTGIQSFALAQEQDTAQPLA
AEKTAALADTGHTVDLAANGQQGHETLLYKLLSAASATGGNGFDEVNGFKVASFESNADA
DRIDLSSLLTDYAAHTGDPIGNYLQLTQSNGGTVLSIDRDGAGGAHAMTPLLTLNGVSVD
LATLLANHQLVVV