Protein Info for GFF5833 in Variovorax sp. SCN45

Annotation: Oxidoreductase, short-chain dehydrogenase/reductase family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 231 to 250 (20 residues), see Phobius details PF00106: adh_short" amino acids 11 to 194 (184 residues), 168.3 bits, see alignment E=2.2e-53 PF08659: KR" amino acids 14 to 167 (154 residues), 28.1 bits, see alignment E=2.7e-10 PF13561: adh_short_C2" amino acids 20 to 255 (236 residues), 195.3 bits, see alignment E=1.8e-61

Best Hits

KEGG orthology group: None (inferred from 76% identity to bpl:BURPS1106A_0060)

Predicted SEED Role

"Short-chain dehydrogenase/reductase SDR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>GFF5833 Oxidoreductase, short-chain dehydrogenase/reductase family (Variovorax sp. SCN45)
MSSTGNSMAGKVAFITGGGTGIGAAVAAQFAAAGGRVVLMGRRLAQLEAVASKLGGLAVA
GDAASTEDVRRALAQAREKFGRVDVLVANAGGHGVGDALSTDDASWALSTRLNLDTAFVC
ARELLPELIERRGNIVVLSSLAGHFAGPGVVGYVTMKHALIGLVRSLARDYGRQGVRVNA
VCPGWVRTEMADEQMQVLVDKYRLADADAAYDLVTRDVPMGRAASPEDVANAVMFLASPL
AAMVSGSSLMVDGGASAVDLPTIAFAHEA