Protein Info for GFF583 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 179 to 198 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

"similar to hedgehog protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>GFF583 hypothetical protein (Sphingobium sp. HT1-2)
MRLFFSALPLLAVTPALAQQATGSDPVVNLQRAAPPPPADDPRRQGPELDVFRGTATPTP
TPTPSLPPIVAPTVTPAPTQRAPATTPAPAPQRPTPTPAPTRTETPRTTPAPTPAERPAA
RDATPAQPSPAPTVAEPDNVANAVETPPPAALPAPEPVTADNSVTTAEPAPDAEAQGLSW
PWIAAAIAALAVIAGFLLMRRRRAAADVDAVPASAPPPAAPRPAPAPVAPPPPAPTPAPA
PAPIPAPTPAPAPEPAASAPASDAGDRPWIDLGLDISLARSSLIGVTIGYTLLLHNRGDR
PARDIMVRGILGNAGTQQDALLRHFFGGETGMPLHSIVSIAPGETVRMTNELRLAQDEIV
PVTMGERSLLVPIAAFDAHYRWGEDEEAPEGTGRTGRAFIVGQEQDPPAERLSPFRLDQG
PRQYRRPAARAAAEVPPA