Protein Info for GFF5823 in Variovorax sp. SCN45

Annotation: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 transmembrane" amino acids 36 to 57 (22 residues), see Phobius details amino acids 78 to 96 (19 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 128 to 146 (19 residues), see Phobius details amino acids 152 to 171 (20 residues), see Phobius details PF02233: PNTB" amino acids 29 to 371 (343 residues), 518.4 bits, see alignment E=1e-159

Best Hits

Predicted SEED Role

"NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)" in subsystem Phosphate metabolism (EC 1.6.1.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.1.2

Use Curated BLAST to search for 1.6.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>GFF5823 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) (Variovorax sp. SCN45)
TAAPVAALIGAQTPDGAVVLDGFVRYAIPYGNRLELFLGAAIGAITFSGSVIAFGKLSGK
YKFRLFQGAPVQFKGQHMLNLVLGLLTIALGLLFVATESWGAFFAMLALAFVMGVLIIIP
IGGADMPVVVSMLNSYSGWAAAGIGFSLNNAMLIVAGSLVGSSGAILSYIMCKAMNRSFF
NVILGGFGGEAATAGGAAKEQRPVKTGSADDAAFVLGNAETVVIVPGYGLAVARAQHAVK
ELAQKLTDKGITVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINGEFGQADVAII
LGANDVVNPAAHTKGSPIYGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVF
GDAKKVVEDMGKAIE