Protein Info for GFF5804 in Variovorax sp. SCN45

Annotation: FIG00978734: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 28 to 52 (25 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 97 to 119 (23 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details amino acids 182 to 201 (20 residues), see Phobius details amino acids 228 to 249 (22 residues), see Phobius details amino acids 261 to 282 (22 residues), see Phobius details amino acids 293 to 312 (20 residues), see Phobius details amino acids 318 to 337 (20 residues), see Phobius details amino acids 357 to 377 (21 residues), see Phobius details amino acids 384 to 402 (19 residues), see Phobius details PF07690: MFS_1" amino acids 36 to 343 (308 residues), 138.4 bits, see alignment E=2.8e-44 PF00083: Sugar_tr" amino acids 66 to 200 (135 residues), 31.9 bits, see alignment E=7.2e-12

Best Hits

Swiss-Prot: 33% identical to YFHI_BACSU: Uncharacterized MFS-type transporter YfhI (yfhI) from Bacillus subtilis (strain 168)

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 92% identity to vap:Vapar_4007)

Predicted SEED Role

"FIG00978734: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>GFF5804 FIG00978734: hypothetical protein (Variovorax sp. SCN45)
LNASPPAPDSAATDISSFSLPSGKPANFLRAVLALGVGGFAIGTGEFVIMGLLPEVAKDI
GVSIPQAGHVISAYALGVVIGAPVLAVLAAGWRRRALLIALMAVFAAGNFASAAAPNYLL
LNLLRFAAGLPHGTYFGVAALVAATLAPPGRRARAVGLVMLGLTGATLVGVPIAAWLGQI
FGWRAAFVFVGVIALVAIALLRRDIPDMAPAAGASPWRELGALKRKQVWFTLGIGAIGFG
GMFAVFSYIKPTLIEVAGMPLGGVPFVLALFGLGMVMGNLVGSRLADKSLMRTIGGLLVY
AALVLAMFTFAAHNMVTASINVFLIGTTVAIGPALQIRLMDVAGDAQTLAAALNHSAFNM
ANALGAWLGGVAIAAGLGWTSTGWVGALLALAGMGVFGWAIASARADARQQATAIAC