Protein Info for GFF5801 in Variovorax sp. SCN45

Annotation: Urea ABC transporter, permease protein UrtC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 50 to 72 (23 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 133 to 156 (24 residues), see Phobius details amino acids 162 to 181 (20 residues), see Phobius details amino acids 212 to 232 (21 residues), see Phobius details amino acids 262 to 280 (19 residues), see Phobius details amino acids 300 to 323 (24 residues), see Phobius details amino acids 335 to 359 (25 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 44 to 358 (315 residues), 456.7 bits, see alignment E=2.8e-141 PF02653: BPD_transp_2" amino acids 52 to 347 (296 residues), 144 bits, see alignment E=2.5e-46

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 93% identity to vpe:Varpa_4649)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>GFF5801 Urea ABC transporter, permease protein UrtC (Variovorax sp. SCN45)
MSKVTLPTKGPLLSGKGWTAFFVALIVVCAVAPALNMWVPVDSPLHMSDYAVALVGKIMC
YAICALAMDLIWGYTGILSLGHGLFFALGGYMMGMYLMRQIGRDGNYKSDLPDFMVFLDW
KTLPWHWTFSDSFIATLILIVAVPGLIAFVFGFFAFRSRIKGVYFSIITQAMTFAAMLLF
FRNETGFGGNNGFTDFKRILGIPIATQEMRMTLFALTGATLLGFFLFAKWLIGSKFGRVL
QAIRDAETRVMFSGYNPLPYKLTIWVISAVMCGVAGALYVPQVGIINPGEMSAANSIEIA
IWAAVGGRATLIGPIIGAFIVNGAKSWLTVAYPEYWLYFLGALFIAVTLFLPNGIVGLVR
KWLSREKKAAPAEAVQEARRAVATEQGVEPDALASLPVDAKGARA