Protein Info for GFF5785 in Variovorax sp. SCN45

Annotation: FIG00931285: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 transmembrane" amino acids 38 to 56 (19 residues), see Phobius details amino acids 62 to 83 (22 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details amino acids 184 to 203 (20 residues), see Phobius details PF00512: HisKA" amino acids 241 to 304 (64 residues), 42.3 bits, see alignment E=6.2e-15 PF02518: HATPase_c" amino acids 349 to 455 (107 residues), 76.8 bits, see alignment E=1.8e-25

Best Hits

KEGG orthology group: None (inferred from 93% identity to vap:Vapar_4027)

Predicted SEED Role

"FIG00931285: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (471 amino acids)

>GFF5785 FIG00931285: hypothetical protein (Variovorax sp. SCN45)
MANASIASSTPAPASADEAESWVRGELIRSLMRSARGSYFVSAALMPAMVGLNWAYVSHW
ELLTWLVAGLIATACRAWGAQVYAVRYAGRSSAAQQQFTERYGFVWSTSAVVWGFSVLLF
FERTPQVNQFMSWLIVAGVGTFPLNGLALHPPLLKRYVNTLFITMLGAVVIRLSGIMLQH
PQFQYSYLMPILPILHWFLLLRAGRHIYETARNSLELLFHNHILIKSLTQQRQAAVSAVA
MKNRFLASAAHDMRQPVLALSLYADWLRNEPELVLELAPKIVRATHAVNALFDSMFDLAR
IDSGQVRLHVERVDVPELLHDLELQYRPVAESRGLDFRVHVCEGSFLTDPIRVRRMIGNL
LANAIKYTTEGGVLLAARQTRDGLRVEVWDTGIGIAPEHLRDVFLEFYKVADHAGTSDGF
GLGLAIVARLSHVLGHPVSVRSRLGSGSVFRVALHDADEAVAQARVTASGG