Protein Info for GFF578 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF16656: Pur_ac_phosph_N" amino acids 41 to 138 (98 residues), 61.4 bits, see alignment E=1e-20 PF00149: Metallophos" amino acids 146 to 345 (200 residues), 56.4 bits, see alignment E=5.7e-19

Best Hits

Predicted SEED Role

"purple acid phosphatase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (466 amino acids)

>GFF578 hypothetical protein (Sphingobium sp. HT1-2)
MSRLFLTMLLMASAAPLSAQPTASPPVPRSAGTPYAARTLPDRIMLTPAADPSRGMAVAW
RTDAAQTASEAQIAISVDGPTLEEKARTVTGPVGTAKDSANGPALYHQIRFDNLTPDTVY
AYRLKGSAGWSEWLQFRTAAAEARPFRFLYLGDIQNGILTYASRVIRQAFHANGGIELVA
HAGDLAAQRDDLDHDDEWGEFNQAGSYNWSIVPQLPATGNHEYVDVVKPDGSESRKLGPY
FPLQFALPDNGVPGLKTTYFVDYQGVRFIVLDGTSAIDLGTMAQQTAWLDATLASSKAKW
NVVLFHQPIFTCARPQDTSEVKAAWKPVFDKRKVDLVLQGHDHCYSRLTSEAGREASAQA
RANGAIQGPVYLVSVTGSKMYGLNDRARTQPDKTAEATELYQIVDVDGDRLKFRTYTASG
KLYDGFDLTKGADGNHLTDTSEPTIAVRTCTGNIGPDGGTCVARGK