Protein Info for PS417_02930 in Pseudomonas simiae WCS417

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 923 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 173 to 190 (18 residues), see Phobius details amino acids 202 to 224 (23 residues), see Phobius details amino acids 237 to 256 (20 residues), see Phobius details amino acids 268 to 286 (19 residues), see Phobius details amino acids 292 to 311 (20 residues), see Phobius details amino acids 322 to 345 (24 residues), see Phobius details amino acids 351 to 372 (22 residues), see Phobius details PF07696: 7TMR-DISMED2" amino acids 30 to 159 (130 residues), 74.3 bits, see alignment E=2.5e-24 PF07695: 7TMR-DISM_7TM" amino acids 172 to 374 (203 residues), 91.4 bits, see alignment E=1.9e-29 PF00512: HisKA" amino acids 398 to 463 (66 residues), 73.1 bits, see alignment 3.9e-24 PF02518: HATPase_c" amino acids 510 to 624 (115 residues), 51.3 bits, see alignment E=3.7e-17 PF00072: Response_reg" amino acids 644 to 760 (117 residues), 69.5 bits, see alignment E=6.9e-23 amino acids 793 to 907 (115 residues), 81.2 bits, see alignment E=1.6e-26

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfs:PFLU0610)

Predicted SEED Role

"Sensor histidine kinase/response regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TVT8 at UniProt or InterPro

Protein Sequence (923 amino acids)

>PS417_02930 histidine kinase (Pseudomonas simiae WCS417)
MRWLRIAIGFTVSLLTLLCLFPAQAAAQGSGWAVLLDEQADLQLSDIRSSRYTNQFSPTE
LDRITAAEPDGALWVRFKLQPGKHEQVLRVFAPDLSHLSLYVLDGDTLVEQQSTGTRQPQ
AERPLPSSDFMLPMPQSQKPLEVYLRLVSEHELRPYITLEPAVLAAADQTQTLIYGLLFG
CLLMLILHNLTRFAYHRSRSSLWLAACEILLMLSLALLLNLIGPWLPNWHAIQTPGAYLA
LLLTAPCGLMFAYRFFMPLGPHPLNKLLMADILFIVLCGLLLLFVNTLPLNIITYALVAL
AGLSMLFVSAYHWQKGYRPARLFVAAMVVFNIGTLIILPALLGLTMVSPQGLIVTLLAFI
CLSGLLMSLALGERQRAIVEARFSLSRDLAASNAEIAAKAEFLAKISHEIRTPMNGVLGM
TELLLGTPLSVKQRDYVQTIHSAGNELLTLINEILDISKLESGQIELDDVQFDLNALIED
CLSIFRAKAEQQNVELISFIQPQVPRVISGDPTRLRQAMLSLLENALQKTDEGEVLIVVA
LDDRSTKPRLRIAVQDSGLPMEAAERDALLHSELHSKNFFSATRLNGHLGLVIARQLILL
MNGEFGIKSGSHQGSTLWLTLPLDPERLEHPTSDLDGPLKGARVLVVDDNDTCRKVLVQQ
CSAWGLNVSAVPSGKEALALLRTKAHLRDYFDVVLLDQNMPGMTGMQLAAKIKEDPSLNH
DILLIMLTGISNAPSKIIARNCGIKRILAKPVAGYTLKTTLADELTQRSKGNVPPRPVLN
TPAAITVPTDFRILVAEDNSISTKVIRGMLGKLNLNPDTASNGEEALEAMKAQRYDLVLM
DCEMPILDGFSATQQLRAWEVSHQRVRTPVVALTAHILSEHKERARQAGMDGHMAKPVEL
SQLRELVEFWVAQRQQRPEHAPS