Protein Info for GFF5745 in Variovorax sp. SCN45

Annotation: Flagellar hook-length control protein FliK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 479 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF02120: Flg_hook" amino acids 336 to 415 (80 residues), 73.1 bits, see alignment E=6.7e-25

Best Hits

Predicted SEED Role

"Flagellar hook-length control protein FliK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (479 amino acids)

>GFF5745 Flagellar hook-length control protein FliK (Variovorax sp. SCN45)
MPPMITPSVVANGSSAPSSAAQAGQRGRGTDDAQGASFGAALDRSRAGNRNAAASRDGAA
PSTDIASADRKTVRKPGTDEDTKDAPLPADPNLAFLAPAHTPLHALTLAGRASAQAARGT
NAADTATAAGAADAPLETAVQDPMAKALPDDATLSADAKLAPDADKAIAKTADLQALAKD
AAAAKPGAPGSQPPADASPATALHDIASAAVAAQTVAVGTTKPAASAGAPVGTAASGRAA
SGRTAASAATAEQLAGAAQSKAATADTKAAALPVAATAAATGGDDAQSTPTPIAIQQGAT
VTASAERSADAPATRPGAHTIAPEVGSEKWAPALGQQLARMSTTGHHTAELNLNPAGLGP
LKVTLSIGDNQAQAMFVSAHESVRKAVEAALPQLRNSLSEQGITLGQTSVGAEARQSFGQ
DAAFAQQNQQHQQQAARQQGGPSYPGAGRAGSSMAAEPVAAARASLAGNHARSGVDTFA