Protein Info for GFF5744 in Variovorax sp. SCN45

Annotation: Flagellar basal body-associated protein FliL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 transmembrane" amino acids 23 to 44 (22 residues), see Phobius details PF03748: FliL" amino acids 69 to 167 (99 residues), 72.2 bits, see alignment E=2.4e-24

Best Hits

KEGG orthology group: K02415, flagellar FliL protein (inferred from 62% identity to vap:Vapar_4174)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (167 amino acids)

>GFF5744 Flagellar basal body-associated protein FliL (Variovorax sp. SCN45)
MATSSSAANAIPADTGSRRSSKLLIGLLIAAGLVVAGGAAYVLVPRFMGSPATAEAAKAP
VPEKPIFLMLDPLTVNLQSEGRGRFLQIGMALRVRDEQTKAQLVEFMPEVRSRLLLLLSN
RAPDSIVSPEDKAKLAEEIRKALSTPLTAGSPELGISSVSFNTFVVQ