Protein Info for GFF5668 in Variovorax sp. SCN45

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 50 to 70 (21 residues), see Phobius details amino acids 77 to 100 (24 residues), see Phobius details amino acids 106 to 126 (21 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details amino acids 225 to 245 (21 residues), see Phobius details amino acids 265 to 288 (24 residues), see Phobius details amino acids 300 to 320 (21 residues), see Phobius details amino acids 328 to 345 (18 residues), see Phobius details amino acids 358 to 383 (26 residues), see Phobius details amino acids 404 to 425 (22 residues), see Phobius details amino acids 458 to 485 (28 residues), see Phobius details PF07690: MFS_1" amino acids 16 to 405 (390 residues), 138.7 bits, see alignment E=1.1e-44

Best Hits

KEGG orthology group: None (inferred from 90% identity to vpe:Varpa_4720)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (503 amino acids)

>GFF5668 Uncharacterized MFS-type transporter (Variovorax sp. SCN45)
MYSSSSSKNWLLAAVCLAALGMPLSFTGPAVVLPAIRDTLGGSPVQLNWVTNAFMLSFGA
TLMAAGALADAYGRKRVFLLGLAVVALSSSLLTLAPGIVAFDLARALQGLGSAAAFAAGT
AALAQVFDGTARTRAFSLIGTSFGVGLSCGSMLSGWLAQSFGWQAVMLSPGAVSLLALCI
ASMNMRESRNPDAMGLDMPGTLSFTAALSLLTLGVLQAPDSGWGSPWVLGALAGAALMGA
AFVAIERRVAHPMLDLSLFRFPRFVGVQLLAAAPAYGFVVLLVLLPIRFVGLEGRGAIEA
GAFMFALSGPILVVPTLAASLAHRFSSGAISAVGLLVCAAGLFWLSRCGPGTSLGGMVWP
LLLIGAGIGLPWGLMDGLAVSVVPRERAGMASGIFNTVRVAGEGIALALVGAGLTALVTL
QLGAFSAASQAAQRVTTGDLSQALALLPGVDRAALLHAYGVAFGTLLCVLAGVTVLTALV
VFAFLRGDTHPETSAAALESPAC