Protein Info for GFF5664 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 534 PF13175: AAA_15" amino acids 1 to 45 (45 residues), 34.7 bits, see alignment 1.6e-12 amino acids 333 to 420 (88 residues), 34.4 bits, see alignment E=2e-12 PF13304: AAA_21" amino acids 284 to 419 (136 residues), 40 bits, see alignment E=5.1e-14

Best Hits

KEGG orthology group: None (inferred from 84% identity to vpe:Varpa_4724)

Predicted SEED Role

"Uncharacterized protein MJECL43"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (534 amino acids)

>GFF5664 hypothetical protein (Variovorax sp. SCN45)
MRLASFQITNFRSINDSGSIDSTQITAILGRNDSGKSNLLRALHSLNPTDGLVELSPIKD
FPRHRRLEECNGDTPVVTTRWALEPGEQAALAEILPRAAGVSHVSAGRGYAATRWAGLEG
LSALSLDVGDIKAKVRKIVPAVKAAAEKVAEEQRALLEQEADTFDAAMIMNPDYIKWSDG
AVKAMQALRKALAAADAELSDKQDQMLAELEDMARAIANDEPALARARAWVLENLPRFVY
VDEYPALPGRQNIAEYLGREGWGQLTPEQQSFGKLCKVAGLDPRKLQELLDKNDQATRNQ
LANRAGSVVTAEIRRLWKDRPLKVRFNLDGQYLDTLVSDPNGAYEVEVNLEERSRGFQWF
FSFYIAFFADTQGGRAEDAILLLDEPGLHLHAHSQADLLAHFEKDFGNQIIYTTHSPFMV
PVHKLDAVRTASLGETSGTTVSNTAEGDERTLFPLKAALALSRMASEPVKVEAAKPVAAK
AVAGEVTKPAKVAKPVDAVVAVAAAPAVAAEATVEPAPVGAVVEPADSELTQAA