Protein Info for GFF563 in Variovorax sp. SCN45

Annotation: Type IV fimbrial biogenesis protein PilY1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1131 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF05567: T4P_PilY1" amino acids 610 to 957 (348 residues), 200.2 bits, see alignment E=2.9e-63

Best Hits

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1131 amino acids)

>GFF563 Type IV fimbrial biogenesis protein PilY1 (Variovorax sp. SCN45)
MNIKEFSRAAVAVSLVLAQCVGHAAQYPLIQAPRNTAIREPAPNVIVSVDNSGSMSFSSW
ASETSSPPPGTPNRIEALKKALKDNFSAANIPNDRIRLSWQAMNLGRDENSCVGFFGDIS
EGPYQASKCKFGGQSNANLMRSLDSTHRANFMSWVDALTANGGTPLHAMMTRAGEYMKTT
GQYSPYSDDPGVEGATQSSCRKSFHIFMTDGEYNLFGFNPDPAQLNMPIIGNVDGARRVL
PDSVVYLPRAPYKDNAGAINLPSNWSKEKSGNKDVWKPTAEYRPTLADMSFHYWASDLQP
GISNNVKKVIAEGGNTMVGTAMVPEYWNPKNDPANWQHLTTYTIGFGAASSWAGAPAITA
SAPQPTYSGDYARLVDGSIAWVDPLVNSLGSSPMGQGLVVWNAGASASGYWHETESNTAA
VRMDLWHAALNSRGTFTPASNANALSDAFRSIIGQILLNTSVPLTSISASASRVSTGTAV
YRAGYDTADWSGTLTATRFGSSGQLESSADWSARDLLDARMAARGAHDSNRKVLSFSGTA
AATATSAATRGSGIPFRWASLSDTQKAALKGSTSSDDASIALGRAVLDFLRGDRSNEGAG
LELRKRGHVLGDIVGSSVWYAGKPNSGFTNDAYAKFASIARTPMVYVGANDGMLHAFNAG
TGQEAFAYVPEGLYGTAAAPKLKRLSEGSYSHRYYVDGSPFVADIYMGATATASTTDAEK
VAAWKSFLVGTLGAGGKGYFVLDVTKPQDIDETRARETALIDTTALSDDDLGHQFQQPAL
DSFSRRALQVASLKNGRKAVILGNGYNSASEKAMLWIQYLDGDKSILKIPAPVTQVTGTG
NGLSAPRVVDRDGDGKVDFAYAGDLLGNMWRFDLSDPDSRKWKATLGSAATASSLDNVPL
FAAGATQPITAAPVVVGHPRGGYMVVFGTGRLFAVGDDSSTANQYLYGIRDGANGSTGTA
VLTDLVAQTVGASTVEEEGGEFRTVSNNSVNYSGSRAKRGWYFQLPTAKERIVYPGDALS
SSAGLFSSTVPGSGSNALDCTAGTNDDGWSMVVDFFDGSAPDGIAYGTAATTTTGYLGFR
NSSGKDDIVFEPQGREKGKDVICNAAGECKAPIRPDIVRRFGWRNLMSSSN