Protein Info for GFF5629 in Variovorax sp. SCN45

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 transmembrane" amino acids 40 to 64 (25 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 132 to 151 (20 residues), see Phobius details amino acids 157 to 179 (23 residues), see Phobius details amino acids 193 to 213 (21 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details amino acids 289 to 311 (23 residues), see Phobius details amino acids 337 to 361 (25 residues), see Phobius details amino acids 373 to 393 (21 residues), see Phobius details amino acids 399 to 423 (25 residues), see Phobius details amino acids 435 to 456 (22 residues), see Phobius details amino acids 475 to 493 (19 residues), see Phobius details amino acids 535 to 554 (20 residues), see Phobius details PF07690: MFS_1" amino acids 50 to 451 (402 residues), 110.5 bits, see alignment E=4.3e-36

Best Hits

KEGG orthology group: None (inferred from 94% identity to vpe:Varpa_4741)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (565 amino acids)

>GFF5629 Uncharacterized MFS-type transporter (Variovorax sp. SCN45)
MAGSSAGVLEGDRIGGSGVQQQPGFLEKERIIAGPGFNRWLVPPAALAIHLCIGMAYGFS
VFWLPLSKALGTAGTGAQACAKDMSFFAELFATNCDWRVATLGWMYTLFFVFLGCSAALW
GGWLERAGPRKAGVVSALCWCGGMLLSALGIHLHQFWLMILGSGVIGGIGLGLGYISPVS
TLIKWFPDRRGMATGMAIMGFGGGAMIGSPLAVDLMKRFSTATDVGVMQTFVVMALGYFV
FMMAGALGYRVPPSGWKPEGWTPPPAQTSNTMITQRHVHVKKVWGIPQFWLVWLVLCMNV
SAGIGVIGMASPMLQEVFGGALIDLPAKYGQLDKTQLAAIAVVAGGFTALLSLFNIGGRF
VWASLSDKLGRKLTYTVFFVLGAVLYASIPSSAGAGSKLLFVGACCVIVSMYGGGFATVP
AYLADLFGTQFVGAIHGRLLTAWATAGILGPVVVNYMREYQLGLGLPREQVYNQTMYILV
GMLVIGFIANLLVRPVADKHFMTDAELAVEKKLAHEKASAAEVGSGSGRADTVSPLVVAL
AWVAVGIPLAWGVYKTLMSAAKFFN