Protein Info for GFF5616 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 149 to 176 (28 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 241 to 264 (24 residues), see Phobius details amino acids 275 to 300 (26 residues), see Phobius details amino acids 312 to 334 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (345 amino acids)

>GFF5616 hypothetical protein (Variovorax sp. SCN45)
MTATSLHPTPHETARRLPRDLALITVAIDALMVLVNLAVQLAPDTPEGAQMRGTYALPGV
WIPMVFSLGMAWVLAAALAWSHGRNALEKRGVGSVSLLARPRLRYAAAYLVVLLLNFYAL
SPLLYEVQLLFMPGGRLQDVAGPSSMRAVMAVFVFLQSVAQLIVLVLGVWAAAWVALRAG
RAAQLASAAEAPDSEDVGGAPPRRAVALVGAAMFASLQMWSGVAMSRWTSMGRGVDGPEL
LFAWMVPPLVVFGLAFWGGWLGATAGLARARPFRAVGASVLAFVLVQVSCIVIAIAWLYI
ASSISRSFYSPAGLIGFVLAFVLIYAIHVVALMRAATRWLYRRYL