Protein Info for GFF5584 in Variovorax sp. SCN45

Annotation: Cyclic-di-GMP-binding biofilm dispersal mediator protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF23441: SDR
  • amino acids 51 to 245 (195 residues), 29.8 bits, E=9.8e-11
• PF00106: adh_short
  • amino acids 54 to 244 (191 residues), 189.7 bits, E=1e-59
• PF01370: Epimerase
  • amino acids 57 to 228 (172 residues), 23.3 bits, E=1e-08
• PF08659: KR
  • amino acids 57 to 217 (161 residues), 39.1 bits, E=1.9e-13
• PF13561: adh_short_C2
  • amino acids 63 to 292 (230 residues), 193.9 bits, E=8.2e-61

Best Hits

KEGG orthology group: K00059, 3-oxoacyl-[acyl-carrier protein] reductase [EC: 1.1.1.100] (inferred from 79% identity to vpe:Varpa_5743)

Predicted SEED Role

No annotation

MetaCyc Pathways

• superpathway of fatty acids biosynthesis (E. coli) (48/53 steps found)
• superpathway of fatty acid biosynthesis II (plant) (38/43 steps found)
• palmitate biosynthesis II (type II fatty acid synthase) (29/31 steps found)
• biotin biosynthesis I (14/15 steps found)
• oleate biosynthesis IV (anaerobic) (13/14 steps found)
• superpathway of unsaturated fatty acids biosynthesis (E. coli) (17/20 steps found)
• superpathway of fatty acid biosynthesis I (E. coli) (14/16 steps found)
• 8-amino-7-oxononanoate biosynthesis I (10/11 steps found)
• palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) (8/9 steps found)
• fatty acid elongation -- saturated (5/5 steps found)
• gondoate biosynthesis (anaerobic) (4/4 steps found)
• (5Z)-dodecenoate biosynthesis I (5/6 steps found)
• stearate biosynthesis II (bacteria and plants) (5/6 steps found)
• anteiso-branched-chain fatty acid biosynthesis (25/34 steps found)
• even iso-branched-chain fatty acid biosynthesis (25/34 steps found)
• odd iso-branched-chain fatty acid biosynthesis (25/34 steps found)
• 8-amino-7-oxononanoate biosynthesis IV (4/5 steps found)
• cis-vaccenate biosynthesis (4/5 steps found)
• octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) (9/12 steps found)
• palmitate biosynthesis III (21/29 steps found)
• (5Z)-dodecenoate biosynthesis II (4/6 steps found)
• stearate biosynthesis IV (4/6 steps found)
• tetradecanoate biosynthesis (mitochondria) (17/25 steps found)
• petroselinate biosynthesis (2/6 steps found)
• 2-allylmalonyl-CoA biosynthesis (2/8 steps found)
• streptorubin B biosynthesis (20/34 steps found)
• mycolate biosynthesis (26/205 steps found)
• superpathway of mycolate biosynthesis (27/239 steps found)

KEGG Metabolic Maps

• Biosynthesis of unsaturated fatty acids
• Fatty acid biosynthesis

Isozymes

Compare fitness of predicted isozymes for: 1.1.1.100

Use Curated BLAST to search for 1.1.1.100

Protein Sequence (294 amino acids)

>GFF5584 Cyclic-di-GMP-binding biofilm dispersal mediator protein (Variovorax sp. SCN45)
MPIFNFQLNLIDPIDGYRERNEMPRLEAFNTQRIGKIMASSNASSSSAPVLAGKVAFVTG
GSRGIGAAIVRRLARDGAAVAFSYASSAAPADELVRAVQAEGGRAFALKIDSADADALKA
GIDQAAKHFGGRIDILVNNAGVLHLGPVEQFPLADFDRTIAVNVRAVFVAIQAALAHMGT
GGRIVNIGSTNAERMPFAGGSVYAMSKSALTGLVQGLARDLGPRGITVNNVQPGPVDTDM
NPASGPMAATMHGFMAIDRHGHADEIAGMVAYLAGPEAAFVTGAGLNIDGGFAA