Protein Info for PS417_02840 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1964 transmembrane" amino acids 1650 to 1667 (18 residues), see Phobius details PF14220: DUF4329" amino acids 31 to 169 (139 residues), 32.5 bits, see alignment 3.6e-12 amino acids 459 to 594 (136 residues), 29.3 bits, see alignment 3.7e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TXE8 at UniProt or InterPro

Protein Sequence (1964 amino acids)

>PS417_02840 hypothetical protein (Pseudomonas simiae WCS417)
MDEHSNRDKRAAIPPGHTKLPPLTPAFISADDAARYVHERIGTTRDIEYGSVIMQRLSDQ
LYVATEPALGQAKNFDLNLILERERGSTFQFVEPQGYKLVGALHSHPDDFAGTQRANPTW
SPQQVKAFMGFFSTDDIIVNYRVGVQLPLAYLSGPNGELLRYQTRFSNAEDQRVSWLRGE
GGWTSVYDAEGTEEGAYKALASVGSIRFVLSNAAWGGSVGDVPGDWEPYTPFKAPPMQLN
CGPVFPSRDQVLNHAATRIKRQPENRLHVLILQGAVQGRYVTCEPQLAELSGWPSGGLLS
RLPPGFHVEGVYFHAQPSPSQYPTVESWLYQNFISPLELATHIAQFRRYSPQPRAGTTLY
IRMRDQALLRYRFSGSALESQLFAQAPGGPVTDNGQQAALMAGTLTPHDFVLQVAAAGQL
SVIDTSRLWDQVGEVGPQWRPFSKIPQPTLGPPFITADDAARWAHEWINLLEADKEYGGA
ILKKDSRYFATTPIAGEQLTFDHRIMLATDADDNFIAPGGYTCEALYHSHPAHVEQVKLS
NPGISDDHAWMMISFFSPADLSFIIEHRGSVPAHYLCGPEGSVLKYVSSGSATEVLLRKR
ILGEAPFPASEHRESLIWMAAEAGDLRVVLSNARWGGVCGRVKQGWKVNAAVTQVTEEQP
FFTQVFERVELAILAALALPASKQAFGFVLKHIQSDSYVATYPEPPGPLRFAPAGLFPER
SPGKLRLPSNFRLEAIYCRSTSATADAPAHESWLQPLFFSPAQITDAITQARATLELQDK
ARGLALYLLAEDDAVLRFKLPDAQTVTELVNETVPGVLDDNGAQAAIRAGTLTPRHYVRR
VLAAGDLSVVVSGQVWRRSGRVDSRSPLLAPVHRAVLSPAFLSATDAAVYAHEKIGERRD
RAYGGYILKGEDGRFIVTKPMEAGTNPFAAALFFPADDLNPLIPPEPYMIHGRYGSHPAL
SMVEPRWVAQRSWTREEAEINLQAFTVEEIRAVIQQQRPAYLSGSEDCLLAYTPSASSQE
ALLLNGTAPQTGGSLAQMRLDSGLMKPAQWVVIVAEAGDLRIVQGNPLWGPRSPVYADWT
PNFAYAPRFGPPDYATYGAVFSSADEAARDLHARVHGRNLAEQAYFGFILKHKDKAHYLA
SEVVGVNERVKLFNLNSVFAATEDNSYRFPDGFVLCGLFRSQQWQPVGLPASSTWLTRYF
VMPMVLYGALVDSKHRGAKYNNGNNLPIYFSTEEGALLRYLPLPFNVGSGGLVDHAFEEI
EVALASGKKTPQEFVRDWANAGELSVVRTSQCWDKLGRVPRTWSGYENLSRRHVGPAFAN
PDDAARYAAAIVGEGRHRTYGGVLLRLPGGSFAATDPLVVPPQGFALNWIYPDAAIAQGL
YPPGSTIVARYRSVVRQETQILLSVTQKAVYQSMLPTHVLSNLLRREVHVKREYLFGPEG
LILRYQLSGSAEEEELKQQLAPLNLARGDAADNEIERQLRAGTLLPVDFVTQVAKAGDLQ
VVKGDALWGFARPLSGPFVPYVTRAPALEIKQVFADAPCSPIFTQAYDAVRYAQRLSSPQ
AQVQFGYVLKSVKRNAYMTTVPLMRADYSDFKQVFVEGQLPQGYALNGLYLCASTVAIAP
ASDEMATCFFSPASLAMGVNFVSNMAKNGVLPLYLLCADGALLRYLFRKNGAQSLHALNS
EMKTIEPKLLDGSLTVAYYVRGLAARGELYVRVRSTVWAREEAVTAQWRPKLTPWDFADN
PHLLSFCGPLFSHADDAARWTEKQLGGFMGQEYLGAVLVPPSIPGFVGLDPVLDQRTFWE
STVSSVFLFRGIGLDVTSVHPLFLYTLNAVHAFYKVAPRVGNPMSLDLQLLGNFASKDDL
RSYITIVKNNRPVAESLYLSCRGGALLKYVPGFTAGETLLLSVDSSPLPTVLVSGLREAG
KLSVLETDSFWTRRGTLGAEWQVKDVQAAPDPQVVQYGRDKDEL