Protein Info for GFF558 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1255 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF05359: DUF748" amino acids 4 to 334 (331 residues), 268.7 bits, see alignment E=1.8e-83 amino acids 326 to 463 (138 residues), 50.3 bits, see alignment E=1.7e-17 amino acids 457 to 1230 (774 residues), 613.7 bits, see alignment E=1.1e-187

Best Hits

KEGG orthology group: None (inferred from 86% identity to vpe:Varpa_3512)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1255 amino acids)

>GFF558 hypothetical protein (Variovorax sp. SCN45)
LLSLLAFWAIAWLAVPPILKSQLQKIASEKLGRQVTVGKVDFKPWTLELTLNDLRIATAD
GSKPQVAIQRIYADAELQSVFRLAPVIDAVTIDAPAILLTHQADGKYDIDDILAKLSSGP
PADPNAKPARFAIYNIAINGGSVDFDDQTVKRRHELRDFVLKVPFLSNLDSKRDVNTEPK
LAFVLNGSKFDSGALTTPFAESRKTDARVQFKGLDLVPYLGYIPGGLPVRLQAGSLDADL
KIGFEHGATNGLKISGTVEAHTTKVADARGRDLLAFESLKLALDDVRPLESVFHLSEVAL
VNPQLAVARDAAGQLNLLATDPATGATEKAAALPAAPATPAAGQPAEKPVLKVQVDKIAL
SGGRIGWRDETVKPTAAVDVTELGLDVTAVIWPMDKPAQFSGSTAIAGASLKFKGSATDK
MADVETEVDALPLSLAAPYLAQSLEPTLDGKLSGQIDISWAQPDLKFKARRLAADGLALT
QAKTALASVGRFELIDAEADMTKHTLNVASFTATNPKVRIERDNEKRWMFERWLKTPAGG
GTKEAEAKVAAPKPAAAEAPQPGANTKPWALTVGKLAIDNGALSYADKASATPVTMEVTA
FKLLAQKIAPETNTVSPLEVSGRIGSGRSDPGRFDYKGNVVLKPLAAEGRLEVASFPAHA
FKAYYADALNVDIRRAFASYRGTVHYTTTPAGMSIKLAGDTALDDFRANSVSLTQSPGFD
RNTNQLLSWKTLSLRGLQVSMAPNAAPTVDVRETTLTDFFARVIVDPTGRLNLLSLTKKG
EAEATAAAAAAGEASTRKGPGGTTTTTTARAPAQRSTGRAVSAEEMVGGAPEPAKPVATA
AATPAPAAADTGLAPVINFGPMSLVNGKIDFTDLFVKPNYSADLSELTGKLSSFSSNPPK
GEGGRPALADLELRGKAQQTAALEITGKLNPLVKPIELDITAKMRDLDLAPLSPYSVRYA
GHGIERGKMSMDVNYKVAADGQLTATNKLVLNQLQFGDEVAGAPASLPVKLAVALLADRN
GVIDVDLPLSGSLNDPQFSVGPLIWKAVVNLIVKAVTAPFSLLTGGLGGGSGESSAITFD
AGSSDLSAAAKESLDKVAKALTDRPTLQMTVVGTASLEKERDAYQRQRVRQLTLAEKRRV
AVRGGQTGTDVPPVTDAEYPELLTAVYKRADITKPRNLVGLAKDLPLKDMENLLFASVPV
DEESMRQLAVERGAAVRDYLLAKNLPSERLFLGAVRTTASGADWKPGAELSLTMK