Protein Info for GFF5578 in Variovorax sp. SCN45

Annotation: Transcriptional regulator, MarR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 PF01047: MarR" amino acids 43 to 100 (58 residues), 37.5 bits, see alignment E=1.8e-13 PF12802: MarR_2" amino acids 43 to 100 (58 residues), 41 bits, see alignment E=1.7e-14

Best Hits

KEGG orthology group: None (inferred from 96% identity to vpe:Varpa_5749)

Predicted SEED Role

"Transcriptional regulator, MarR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (159 amino acids)

>GFF5578 Transcriptional regulator, MarR family (Variovorax sp. SCN45)
MDLEARAHSEHPEALRLWLRLLTCTQLIEKQVRNELRSQFATTLPRFDLMSQLERSPDGL
KMNELSRRMMVTGGNVTGITDQLVTEGLVERINVEGDRRAWRVRLTPRGRKLFNEMAQQH
EDWIVEAFAGLSGKEIAQLHKLLGKVKQHSHNQLMAETE