Protein Info for GFF5551 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: DNA internalization-related competence protein ComEC/Rec2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 31 to 51 (21 residues), see Phobius details amino acids 59 to 81 (23 residues), see Phobius details PF13567: DUF4131" amino acids 37 to 199 (163 residues), 116.4 bits, see alignment E=5.7e-38

Best Hits

Predicted SEED Role

"DNA internalization-related competence protein ComEC/Rec2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (261 amino acids)

>GFF5551 DNA internalization-related competence protein ComEC/Rec2 (Hydrogenophaga sp. GW460-11-11-14-LB1)
VRSGLIARHAGFVALAAWVLGVALQLQQPALWPMGVYGALLGAGVAGLWALRRARRVAPA
WLLAGVAGVLIGVGLTGARAVHFAADALDPALQGLDIEVTGRIASLPQRGSQGERFEFVV
ESATREAQAVPLSPRLQLAWYSGAGESRSTDSPGLRAGDRWHFTVRLRSPHGNANPHGFD
RERWLWEQGIQATGSVRSGPRDAAPQRLGATPWHPLDRLRQTVAERIEARVPDDPRSAGV
LAALVVGDPSAIVALGKRVVR