Protein Info for PS417_28385 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 634 transmembrane" amino acids 32 to 53 (22 residues), see Phobius details amino acids 59 to 82 (24 residues), see Phobius details amino acids 120 to 140 (21 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details amino acids 217 to 241 (25 residues), see Phobius details amino acids 295 to 314 (20 residues), see Phobius details PF01145: Band_7" amino acids 320 to 531 (212 residues), 74.9 bits, see alignment E=4.4e-25

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfs:PFLU6104)

Predicted SEED Role

"Membrane protease subunits, stomatin/prohibitin homologs"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UUB2 at UniProt or InterPro

Protein Sequence (634 amino acids)

>PS417_28385 membrane protein (Pseudomonas simiae WCS417)
MRVDLEADGASAQGLPRFQQGLFHARRVRQAGISLTVLAIAGWVLALFVALFAPLSIWPV
VLINCASALLLLVAGLQSAWWVADWRAQALEEPLVQLPVEDASRYARLVERFGQQIGTPV
LWLGGWSLLALVSIVEFWNLALPAAPVGQSASVGAALALGLAFGLLVFERRLAQETAAQW
PEASQLAQLSRVAIICLVVSAVCLLFAGANAVWPLRLAVGIGLLPALVSLEFLLRAVLSL
FSPREPRLEPRLMAQSFIAGLLRWPPQPLLALQHELHNRFGIDLRQIWAFTYMRRAFLPV
LLVVLAVGWTLTGVHEVPLQGRGIYERFGKPVQVFGPGLHAGLPWPLGRVINVENGVVHE
LATSVSEAATPELAPAEGPAPLIANRLWDASHVNDKSQVIASSSGDKQSFQIVNMDVRFV
YRIGLTDQAALAATYNSADVTTLLRSTASRILVHDFASRTLDELLGEQRTRLADKIGRAV
QADLQKLDSGVEILATVVEAIHPPAGAANAYHGVQAAQIGAQALISRERGAASEQTNQAL
LQASTARDQATATAREVNAGAQAANLRFAAEQKAYATAGQAFVLEQYLGQLSQGLAHAKL
LILDHRLGADGAPTIDLRSFTLPADPSVPRKAVQ