Protein Info for PS417_28205 in Pseudomonas simiae WCS417

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR01414: outer membrane autotransporter barrel domain" amino acids 117 to 419 (303 residues), 120.1 bits, see alignment E=6.2e-39 PF03797: Autotransporter" amino acids 158 to 410 (253 residues), 195.9 bits, see alignment E=5.1e-62

Best Hits

Predicted SEED Role

"Outer membrane autotransporter barrel"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UHG1 at UniProt or InterPro

Protein Sequence (430 amino acids)

>PS417_28205 transporter (Pseudomonas simiae WCS417)
MSFTQHRLALVIALALSAASLQTAQARGDIEYLPYPFQPDDALPDAWPYEPEANAEPLDG
YLTQKATSHNGLQVAKVLEPALIRLLESGELNSEQIKALEKFGDALGKQPGGIGASLEQL
AGSQNANLATATHNTTQHLSNQLLSTLRSLPTDDEGHVWVQGLGNGGSLDKQGGSAGMKY
ESQGLLLGADWALDDAWRVGVMAAKSTSNLDAQRFSANLDSWHLGGYAVRQDGPLALRLG
AIYSDHAGQNKRNVNLLDYKEQLKGKYNAQSQTLFSEMGYQLGVADLSIEPFAGLGFQRY
HRDSFKETGGLTALNVGAQTQQNLSSTFGLRLATLYRFDNQISLTPHLSTSWKHLYGDVD
SQVRQSYRALPAMADGFTINGTSLDRNSLDLHAGLDLALSTQHTVGLTYSVQAGTNSRNQ
GLMGQWKMSF