Protein Info for PS417_28160 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1525 transmembrane" amino acids 705 to 727 (23 residues), see Phobius details amino acids 748 to 768 (21 residues), see Phobius details PF20178: ToxA_N" amino acids 402 to 615 (214 residues), 72.6 bits, see alignment E=2.1e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U620 at UniProt or InterPro

Protein Sequence (1525 amino acids)

>PS417_28160 hypothetical protein (Pseudomonas simiae WCS417)
MPTFPSSAKDLLTQLTTGPSLREVAAATLRSSLRELYPDLDIDPDLALLITPGWQITAEV
ILPGTPHAQSLTGALSRCVMSNTTVTWIDGEHYLIYQTTLGPNVHLPVKVDTVGSLINEL
APLLPVAYQEQQLLFWNQSPQENGPRWQSFANALRRIWNIESVEGWDEDECNVARNVFLY
PDYADRQLHDKYNTKAYLIDIDVQQATQLSHSNLAALAVLIGRLGEREIILSYSIGTGYA
AFNSQKEFGESLSTHGAIARSSSMHWRLFEPAGNFFEQQACTFIALQIQAIGAVTFENGE
VVATVAQAAPSNTVDLLSLIAPSRLDAVHHALPTWLLDASPTDQSAYGRYSMDVAAQHFQ
DAGKAFDDGIKSIDEFALDAIHTLMLTEHPEVARATLNNVRITITSVQAWGTLIVPGNTQ
IQTLTLAQLALENLIALPLGNKTVSYKNGSDVPAWMTAAYLEALITQVNVGERYPALVKR
TLLDDPVESLRRQQLYIAHLRLQLPLLALQCKVQHVFGVSEQGYRYVCAALSPDSAAREV
DGAAIVIRPLSLRPKLRLTASVDVVSNMFIIGPQDPKKGPCLLYRPLSDVQLMEFPSPSN
LLYAIKQDTPLRQSVLAWLPDNVRTAYAQFVFPGSLPSPWVLTSLVNDPLNALVMTGPID
LGQEVLRGDYFATLFKANAAAMVTLADRQSLSNAEARWQSLKNAGWLIFNTVLPFMGRSV
GAATWIWQLMDDLQQMVDAKEIDDRTTGISALVDIFLTLGMVLATHVATRLGPGSGPAIE
KPGVLPELPPPAAKPELIQKPTVDGVGPPVGHEHTLHISGAVTRNSSSLGTFLDSFTLPK
PDKLGEQHTVAGPYLNLYAKDQHWYAPVGERWFEVIVDENDAVLIVDPQQPGRHGPLLIG
NQLGQWFVDTRLRLRGAGLRSRRKKGEALRPPKIADLRQKLELFENTRAERTASLEKLRS
AIDSAADDAKELARATFLEQIDTRLKEIDVPISQLKSLKIIDTVPNYQDGMASYLKHQLL
LARSAIYEQGIPFRKQLQASQGHFDIENIQEDTWPTVHYRDLYTATQAMIDRLEYVRERR
EQALDLGALGAELVQSDDNFASGHDVDDLKAFKVSLSHFLCVTEGESPSRVDAREALRRI
VDAAELTVQSFREAVQPVNVAPLEQLIETLDSLTDQFSRVDQNLVDLPAEFPTDLNRPDL
ENLRTQVDEFAQRAKKQLTALLRERKTLEPTPGPSNATSRVKRKYIKTRSKGIVVGEQRE
TPAEDGKALVDVKEPMTGKVIATFHEKEPGVWVEQEHVLKPVPRTRVRDLQIAINSGLDL
IDGVDAFITRKEAWAKKTAQLPVEIEESFHRHAKKLEQASLDIEDALTASNLTGIDSPSA
ALASRNLDEAGKKLYREGKRVKIDVLKRRPPEAAHIEILLHEGAVTVDPPVGERIKLRGR
DKGYLREYTVVDATTKLPLWYAHFHYPTPTGPNEAYTAAHLKTHKQRKMGGQRESLSDIA
VYRREIGPQLARSLFLKAKPPQPVA