Protein Info for PS417_28090 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 transmembrane" amino acids 23 to 48 (26 residues), see Phobius details amino acids 64 to 84 (21 residues), see Phobius details amino acids 96 to 116 (21 residues), see Phobius details amino acids 123 to 148 (26 residues), see Phobius details amino acids 160 to 183 (24 residues), see Phobius details amino acids 195 to 214 (20 residues), see Phobius details amino acids 249 to 271 (23 residues), see Phobius details amino acids 287 to 308 (22 residues), see Phobius details amino acids 315 to 335 (21 residues), see Phobius details amino acids 341 to 364 (24 residues), see Phobius details amino acids 376 to 395 (20 residues), see Phobius details amino acids 407 to 425 (19 residues), see Phobius details PF00083: Sugar_tr" amino acids 26 to 236 (211 residues), 82.5 bits, see alignment E=3.2e-27 PF07690: MFS_1" amino acids 63 to 390 (328 residues), 96.3 bits, see alignment E=1.8e-31

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfs:PFLU6049)

Predicted SEED Role

"L-Proline/Glycine betaine transporter ProP" in subsystem Proline, 4-hydroxyproline uptake and utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UJU1 at UniProt or InterPro

Protein Sequence (429 amino acids)

>PS417_28090 MFS transporter (Pseudomonas simiae WCS417)
MSSVPASSAQPSRPLTRNDYKTLSLSALGGALEFYDFIIFVFFATVVGKLFFPVDMPEWL
RMMQTFGIFAAGYLARPLGGIIMAHFGDLLGRKKMFTLSIFMMAVPTLIMGLLPTYAQIG
LWAPVLLLLMRIIQGAAIGGEVPGAWVFVSEHVPPRHIGYACGTLTSGLTAGILLGSLVA
TAINTLYSPEQVSDFAWRIPFLLGGVFGLLSVYLRRWLHETPIFAEMQQRKTLAAELPLR
AVLRDHRGAIVLSMLLTWLLSAGVVVVILMTPTVLQTVYHFSPTVALQANSLAIVTLSLG
CIASGALADRFGAGRVLVTGCALLLATSWTLYHSLMAHPDWLFPLYALTGLFVGTIGVVP
YVMVKAFPPVVRFSGLSFSYNVAYAVFGGLTPLAVSLLMKESPMGPAYYVAALCLMGMVV
GGYLWKRSR