Protein Info for GFF5472 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: iron-chelator utilization protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF08021: FAD_binding_9" amino acids 25 to 138 (114 residues), 122.8 bits, see alignment E=9.6e-40 PF04954: SIP" amino acids 145 to 259 (115 residues), 123.5 bits, see alignment E=7.1e-40

Best Hits

KEGG orthology group: K07229, (no description) (inferred from 57% identity to bbr:BB2831)

Predicted SEED Role

"iron-chelator utilization protein" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>GFF5472 iron-chelator utilization protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MNTSIPNPLAVERVRHEIKVRRLTVQRIDAVSPHFLRIRFFSEALRDFVSASFDDHAKLM
LPAQPGQPLVLPQPGPDGLALPPGAEKPVMRDYTPRQFDRAAGTLDIEFVLHGDGVASRW
AEAARPGDEVGLGGPRGSFVVPTGFDWHLLVGDESAVPAIARRLEELPDTAQAITVIETG
DAADRRTFSTRARLQAHWIQTGATDALASAVAALKLPAGEGFAWAGGEAASIAAVRQALV
DGHGLDKGRVRASAYWKRGAVGHHETLGG