Protein Info for GFF5461 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Tyrosine recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 TIGR02225: tyrosine recombinase XerD" amino acids 16 to 305 (290 residues), 351.9 bits, see alignment E=1.3e-109 PF02899: Phage_int_SAM_1" amino acids 16 to 94 (79 residues), 56.4 bits, see alignment E=2.9e-19 PF00589: Phage_integrase" amino acids 117 to 293 (177 residues), 166.1 bits, see alignment E=6.5e-53

Best Hits

Swiss-Prot: 66% identical to XERD_RALSO: Tyrosine recombinase XerD (xerD) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K04763, integrase/recombinase XerD (inferred from 71% identity to rfr:Rfer_2654)

Predicted SEED Role

"Tyrosine recombinase XerD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (306 amino acids)

>GFF5461 Tyrosine recombinase XerD (Hydrogenophaga sp. GW460-11-11-14-LB1)
VMDQALASASEGIAGAFIDSLWLEEGLSRNTLDAYRRDLVLLGQWLAGHGKTLPETSEAD
LNQYFSDRHAETRATTANRRLTVFKRYFRWALRERVIQVDPTLRLVPARQPLRVPKTMSE
AQVEALLNAPDVGTPLGLRDRCMLELIYASGLRVSELVTLKTWHVGMNEHVLRITGKGNK
ERLVPFGQLAGQWLQRYLGQARVEILNGQQSEDLFVTSRGARAGEAMTRAMFWQLVKKYA
AQAGITSPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKSIVA
QHHPRG